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Tan0010870 (gene) of Snake gourd v1 genome

Gene IDTan0010870
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionHigh mobility group B protein 1
Genome locationLG05:52679721..52681369
RNA-Seq ExpressionTan0010870
SyntenyTan0010870
Gene Ontology termsGO:0043229 - intracellular organelle (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031875.1 high mobility group B protein 1 [Cucumis melo var. makuwa]8.8e-2273.63Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVF
        + EEFRKEYKR          VGKAGG KWKSLSH    PYEAKA K+KAEYEKLMRAYD KKA A DDEESERSKSEVNDED+ASEEV F
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVF

XP_008449957.1 PREDICTED: high mobility group B protein 1 [Cucumis melo]1.3e-2073.86Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE
        + EEFRKEYKR          VGKAGG KWKSLSH    PYEAKA K+KAEYEKLMRAYD KKA A DDEESERSKSEVNDED+ASEE
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE

XP_011653690.1 high mobility group B protein 1 [Cucumis sativus]5.7e-2167.96Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA
        + EEFRKEYKR          VGKAGG KWKSLSH    PYEAKA K+KAEYEKLMRAYD KKA A DDEESERSKSEVNDED+ASEE    H ED    
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA

Query:  FED
         ED
Subjt:  FED

XP_022151579.1 high mobility group B protein 1 [Momordica charantia]2.7e-1866.02Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA
        + EEFRKE+KR          VGKAGG KWKSLSH    PYEAKA KKKAEYEKLMRAYD KKA    DEESERSKSEVNDED+ASEE    H +D   A
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA

Query:  FED
         ED
Subjt:  FED

XP_038883904.1 high mobility group B protein 1 [Benincasa hispida]3.7e-2068.75Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLED
        + EEFRKEYKR          VGKAGG KWKSLSH    PYEA+A K+KAEYEKLM+AYD KKA A DDEESERSKSEVNDED+ASEE    H ED
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLED

TrEMBL top hitse value%identityAlignment
A0A0A0L1B2 HMG box domain-containing protein2.8e-2167.96Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA
        + EEFRKEYKR          VGKAGG KWKSLSH    PYEAKA K+KAEYEKLMRAYD KKA A DDEESERSKSEVNDED+ASEE    H ED    
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA

Query:  FED
         ED
Subjt:  FED

A0A1S3BML2 high mobility group B protein 16.2e-2173.86Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE
        + EEFRKEYKR          VGKAGG KWKSLSH    PYEAKA K+KAEYEKLMRAYD KKA A DDEESERSKSEVNDED+ASEE
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE

A0A5A7SRU9 High mobility group B protein 14.3e-2273.63Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVF
        + EEFRKEYKR          VGKAGG KWKSLSH    PYEAKA K+KAEYEKLMRAYD KKA A DDEESERSKSEVNDED+ASEEV F
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVF

A0A6J1DBK9 high mobility group B protein 11.3e-1866.02Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA
        + EEFRKE+KR          VGKAGG KWKSLSH    PYEAKA KKKAEYEKLMRAYD KKA    DEESERSKSEVNDED+ASEE    H +D   A
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA

Query:  FED
         ED
Subjt:  FED

A0A6J1F068 high mobility group B protein 1-like1.4e-1764.08Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHVV-TPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA
        + E+FRKEYKR          VGKAGG KWKSLS     PYEAKA K+KAEYEKLM+AYD KKA A +DEESERSKSEVNDED+ASEE    H ED    
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHVV-TPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVA

Query:  FED
         ED
Subjt:  FED

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 11.2e-1050Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE
        + E+FR  +K+          VGKAGG KWKS+S     PYE KA K+KAEYEK M AY++      D  ESE+S+SE+NDED+AS E
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE

O49596 High mobility group B protein 21.8e-0947.78Show/hide
Query:  FLMCVNYSEEFRKEYKR------VGKAGGAKWKSLS-HVVTPYEAKATKKKAEYEKLMRAYDRK-KARAVDDEESERSKSEVNDEDKASE
        F+   ++ E F+KE  +      VGKA G KWKSLS     PY AKA K+K EYEK ++AY++K +    +DEES++S SEVNDED A +
Subjt:  FLMCVNYSEEFRKEYKR------VGKAGGAKWKSLS-HVVTPYEAKATKKKAEYEKLMRAYDRK-KARAVDDEESERSKSEVNDEDKASE

P26585 HMG1/2-like protein5.6e-1149.45Show/hide
Query:  VLKENFLMCVNYSEEFRKEYKRVGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAV---DDEESERSKSEVNDEDKASE
        V  E F    N      K    VGKA GAKWK++S     PY AK+ K+K EYEK MRAY++K+A      D+EESE+S SEVNDED   E
Subjt:  VLKENFLMCVNYSEEFRKEYKRVGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAV---DDEESERSKSEVNDEDKASE

P40619 HMG1/2-like protein1.4e-0947.06Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKAR-AVDDEESERSKSEVNDEDK
        + E+FRK YK           VGKAGG KWK L+     P+ +KA K+K EYEK ++AY++K+A  A ++EES++S+SEVND+D+
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKAR-AVDDEESERSKSEVNDEDK

P93047 High mobility group B protein 32.1e-1054.88Show/hide
Query:  VNYSEEF--RKEYKRVGKAGGAKWKSLS-HVVTPYEAKATKKKAEYEKLMRAYDRK-KARAVDDEESERSKSEVNDEDKASE
        V Y EE    K    VGKAGG KWKSLS     PY AKA K+K EYEK M+AY++K +    +DEES++S SEVNDED A +
Subjt:  VNYSEEF--RKEYKRVGKAGGAKWKSLS-HVVTPYEAKATKKKAEYEKLMRAYDRK-KARAVDDEESERSKSEVNDEDKASE

Arabidopsis top hitse value%identityAlignment
AT1G20696.3 high mobility group B38.8e-1256.32Show/hide
Query:  VNYSEEF--RKEYKRVGKAGGAKWKSLS-HVVTPYEAKATKKKAEYEKLMRAYDRK-KARAVDDEESERSKSEVNDEDKA---SEEV
        V Y EE    K    VGKAGG KWKSLS     PY AKA K+K EYEK M+AY++K +    +DEES++S SEVNDED A   SEEV
Subjt:  VNYSEEF--RKEYKRVGKAGGAKWKSLS-HVVTPYEAKATKKKAEYEKLMRAYDRK-KARAVDDEESERSKSEVNDEDKA---SEEV

AT3G51880.1 high mobility group B18.8e-1250Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE
        + E+FR  +K+          VGKAGG KWKS+S     PYE KA K+KAEYEK M AY++      D  ESE+S+SE+NDED+AS E
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE

AT3G51880.2 high mobility group B12.3e-1250.56Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEV
        + E+FR  +K+          VGKAGG KWKS+S     PYE KA K+KAEYEK M AY++      D  ESE+S+SE+NDED+AS EV
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEV

AT3G51880.3 high mobility group B18.8e-1250Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE
        + E+FR  +K+          VGKAGG KWKS+S     PYE KA K+KAEYEK M AY++      D  ESE+S+SE+NDED+AS E
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE

AT3G51880.4 high mobility group B18.8e-1250Show/hide
Query:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE
        + E+FR  +K+          VGKAGG KWKS+S     PYE KA K+KAEYEK M AY++      D  ESE+S+SE+NDED+AS E
Subjt:  YSEEFRKEYKR----------VGKAGGAKWKSLSHV-VTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATAGGGTCTTGAAAGAAAATTTTCTCATGTGTGTAAACTACAGTGAGGAGTTCAGAAAGGAGTACAAAAGGGTTGGAAAAGCTGGAGGAGCGAAGTGGAAATC
CCTGAGTCATGTTGTAACACCATATGAAGCCAAGGCGACTAAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGAAAGAAGGCTCGCGCAGTAGATGACG
AAGAATCAGAGAGGTCGAAATCTGAAGTGAATGATGAGGATAAGGCTAGTGAGGAGGTTGTTTTTAATCACCTAGAAGACACATTTGTAGCATTTGAAGATTCGAGGGGC
TTAGTTGGTTTTTTAGTCATCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGATAGGGTCTTGAAAGAAAATTTTCTCATGTGTGTAAACTACAGTGAGGAGTTCAGAAAGGAGTACAAAAGGGTTGGAAAAGCTGGAGGAGCGAAGTGGAAATC
CCTGAGTCATGTTGTAACACCATATGAAGCCAAGGCGACTAAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGAAAGAAGGCTCGCGCAGTAGATGACG
AAGAATCAGAGAGGTCGAAATCTGAAGTGAATGATGAGGATAAGGCTAGTGAGGAGGTTGTTTTTAATCACCTAGAAGACACATTTGTAGCATTTGAAGATTCGAGGGGC
TTAGTTGGTTTTTTAGTCATCTTTTAG
Protein sequenceShow/hide protein sequence
MDDRVLKENFLMCVNYSEEFRKEYKRVGKAGGAKWKSLSHVVTPYEAKATKKKAEYEKLMRAYDRKKARAVDDEESERSKSEVNDEDKASEEVVFNHLEDTFVAFEDSRG
LVGFLVIF