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Tan0010936 (gene) of Snake gourd v1 genome

Gene IDTan0010936
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionclassical arabinogalactan protein 25
Genome locationLG06:78804342..78804894
RNA-Seq ExpressionTan0010936
SyntenyTan0010936
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]5.7e-3674.1Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA
        MASFWY  C+A+IMAFMASPLL ALPSLPNPK               SS FQELSPDIAPLLPSSGG IPSA+GSIPTIPSNPSPPNPDEFEAPGPD SA
Subjt:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA

Query:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH
        LSP GLPGSFAAPK LP  S SLLLL  L L  F L LH
Subjt:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH

XP_022138732.1 classical arabinogalactan protein 25 [Momordica charantia]4.2e-3977.93Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALP--SLPNPKPSTIASASPSFLTTTS----SPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAP
        MASFWY  CSALIMAFMAS LL ALP  SL NPK STI SASPS  TT S    SPFQELSP+IAPLLPS GG IPSATGSIPTIPSNPSPPNPDEFEAP
Subjt:  MASFWYCSCSALIMAFMASPLLAALP--SLPNPKPSTIASASPSFLTTTS----SPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAP

Query:  GPDPSALSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH
         PDPSALSPFGLPGSFA P  LP  S SLLLL    LF FSL LH
Subjt:  GPDPSALSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH

XP_022958905.1 classical arabinogalactan protein 25-like [Cucurbita moschata]3.3e-3674.1Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA
        MASFWY  C+A+IMA MASPLL ALPSLPNPK               SS FQELSPDIAPLLPSSGG IPSA+GSIPTIPSNPSPPNPDEFEAPGPD SA
Subjt:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA

Query:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH
        LSP GLPGSFAAPKPLP  S SLLLL  L L  F L LH
Subjt:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]9.7e-3675.54Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA
        MASFWY  C+A+IMAFMASPLL ALPSLPNPK       SPS        FQELSPDIAPLLPS+GG IPSATGSIPTIPSNPSPPNPDEFEAPGPD SA
Subjt:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA

Query:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH
        LSPFGLPGSFAAPKPLP  S S LLL  L L  F L LH
Subjt:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]1.3e-3775.54Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA
        MASFWY  C+A+IMAFMASPLL ALPSLPNPK               SS FQELSPDIAPLLPSSGG IPSA+GSIPTIPSNPSPPNPDEFEAPGPD SA
Subjt:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA

Query:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH
        LSPFGLPGSFAAPKPLP  S SLLLL  L L  F L LH
Subjt:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH

TrEMBL top hitse value%identityAlignment
A0A1S3C8K2 classical arabinogalactan protein 251.7e-3370.92Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATG-SIPTIPSNPSPPNPDEFEAPGPDPS
        MASFWY  CSA+IM FMASPLL ALPS+PNPKP              SSPFQELSP+IAPLLPS+G +IPSATG SIPTIPSNPSPPNPD+FEA GPD S
Subjt:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATG-SIPTIPSNPSPPNPDEFEAPGPDPS

Query:  ALSPFGLPGSFAAPKPLPCSSISLLLLLL-LLLFGFSLLLH
        ALSPFGLPGSFA P  LPC S  LLLLL  L L  FS+ LH
Subjt:  ALSPFGLPGSFAAPKPLPCSSISLLLLLL-LLLFGFSLLLH

A0A5A7SSC0 Classical arabinogalactan protein 251.7e-3370.92Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATG-SIPTIPSNPSPPNPDEFEAPGPDPS
        MASFWY  CSA+IM FMASPLL ALPS+PNPKP              SSPFQELSP+IAPLLPS+G +IPSATG SIPTIPSNPSPPNPD+FEA GPD S
Subjt:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATG-SIPTIPSNPSPPNPDEFEAPGPDPS

Query:  ALSPFGLPGSFAAPKPLPCSSISLLLLLL-LLLFGFSLLLH
        ALSPFGLPGSFA P  LPC S  LLLLL  L L  FS+ LH
Subjt:  ALSPFGLPGSFAAPKPLPCSSISLLLLLL-LLLFGFSLLLH

A0A6J1CBZ0 classical arabinogalactan protein 252.0e-3977.93Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALP--SLPNPKPSTIASASPSFLTTTS----SPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAP
        MASFWY  CSALIMAFMAS LL ALP  SL NPK STI SASPS  TT S    SPFQELSP+IAPLLPS GG IPSATGSIPTIPSNPSPPNPDEFEAP
Subjt:  MASFWYCSCSALIMAFMASPLLAALP--SLPNPKPSTIASASPSFLTTTS----SPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAP

Query:  GPDPSALSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH
         PDPSALSPFGLPGSFA P  LP  S SLLLL    LF FSL LH
Subjt:  GPDPSALSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH

A0A6J1H4T0 classical arabinogalactan protein 25-like1.6e-3674.1Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA
        MASFWY  C+A+IMA MASPLL ALPSLPNPK               SS FQELSPDIAPLLPSSGG IPSA+GSIPTIPSNPSPPNPDEFEAPGPD SA
Subjt:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA

Query:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH
        LSP GLPGSFAAPKPLP  S SLLLL  L L  F L LH
Subjt:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH

A0A6J1KVY5 classical arabinogalactan protein 25-like4.7e-3675.54Show/hide
Query:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA
        MASFWY  C+A+IMAFMASPLL ALPSLPNPK       SPS        FQELSPDIAPLLPS+GG IPSATGSIPTIPSNPSPPNPDEFEAPGPD SA
Subjt:  MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSA

Query:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH
        LSPFGLPGSFAAPKPLP  S S LLL  L L  F L LH
Subjt:  LSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGFSLLLH

SwissProt top hitse value%identityAlignment
Q6NN00 Classical arabinogalactan protein 251.2e-0745.63Show/hide
Query:  TIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSALSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGF
        +++S+SP     T S  Q+LSP+IAPLLPS G  +PS  GS  TIPS+PSPP+PD  +   PDP A SPF  P   ++P P P    + +LL+ L++   
Subjt:  TIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSALSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGF

Query:  SLL
        S L
Subjt:  SLL

Q94F57 Classical arabinogalactan protein 263.5e-0444.86Show/hide
Query:  STIASASPSFLTTTSSPFQ----ELSPDIAPLLPSSGGQ----IPSATGSIPTIPSNPSPPNPDEFEAPGPDP-SALSPFGLPGSFAAPKPLPCSSISLL
        STI SA+PSFL    S F      +SPD +PL P+ G       PS +  +PTIPS+ SPPNPD   A  PDP   +SP G P   ++   L  S +S L
Subjt:  STIASASPSFLTTTSSPFQ----ELSPDIAPLLPSSGGQ----IPSATGSIPTIPSNPSPPNPDEFEAPGPDP-SALSPFGLPGSFAAPKPLPCSSISLL

Query:  LLLLLLL
        LL+LL+L
Subjt:  LLLLLLL

Arabidopsis top hitse value%identityAlignment
AT2G47930.1 arabinogalactan protein 262.5e-0544.86Show/hide
Query:  STIASASPSFLTTTSSPFQ----ELSPDIAPLLPSSGGQ----IPSATGSIPTIPSNPSPPNPDEFEAPGPDP-SALSPFGLPGSFAAPKPLPCSSISLL
        STI SA+PSFL    S F      +SPD +PL P+ G       PS +  +PTIPS+ SPPNPD   A  PDP   +SP G P   ++   L  S +S L
Subjt:  STIASASPSFLTTTSSPFQ----ELSPDIAPLLPSSGGQ----IPSATGSIPTIPSNPSPPNPDEFEAPGPDP-SALSPFGLPGSFAAPKPLPCSSISLL

Query:  LLLLLLL
        LL+LL+L
Subjt:  LLLLLLL

AT5G18690.1 arabinogalactan protein 258.2e-0945.63Show/hide
Query:  TIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSALSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGF
        +++S+SP     T S  Q+LSP+IAPLLPS G  +PS  GS  TIPS+PSPP+PD  +   PDP A SPF  P   ++P P P    + +LL+ L++   
Subjt:  TIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSALSPFGLPGSFAAPKPLPCSSISLLLLLLLLLFGF

Query:  SLL
        S L
Subjt:  SLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCTTTTGGTATTGTTCTTGTTCAGCACTCATTATGGCTTTCATGGCCTCACCTTTGCTTGCTGCTTTACCATCTCTACCCAATCCAAAACCCTCCACCATCGC
CTCAGCCTCGCCATCATTTTTGACCACTACCAGCTCCCCTTTTCAAGAACTCTCCCCTGACATTGCTCCATTACTGCCTTCTTCAGGCGGTCAGATTCCTTCTGCAACTG
GTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGTTCGAGGCTCCTGGCCCTGATCCTTCTGCCCTTTCCCCATTTGGGCTACCAGGTTCCTTC
GCAGCACCCAAACCCCTTCCTTGCTCTTCAATTTCACTTCTTCTTCTTCTTCTTCTTCTTCTATTTGGCTTCTCTCTGCTCTTACATTGA
mRNA sequenceShow/hide mRNA sequence
CTTTCACAAATATATTACACTACACACCCTCGATTGAGAGAGAGTCCATTGATTTCATCATCATTAGAATGGCCTCCTTTTGGTATTGTTCTTGTTCAGCACTCATTATG
GCTTTCATGGCCTCACCTTTGCTTGCTGCTTTACCATCTCTACCCAATCCAAAACCCTCCACCATCGCCTCAGCCTCGCCATCATTTTTGACCACTACCAGCTCCCCTTT
TCAAGAACTCTCCCCTGACATTGCTCCATTACTGCCTTCTTCAGGCGGTCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATC
CAGACGAGTTCGAGGCTCCTGGCCCTGATCCTTCTGCCCTTTCCCCATTTGGGCTACCAGGTTCCTTCGCAGCACCCAAACCCCTTCCTTGCTCTTCAATTTCACTTCTT
CTTCTTCTTCTTCTTCTTCTATTTGGCTTCTCTCTGCTCTTACATTGAGTCCTAAAATGTCTTCAGTCCCACTTGTACTTGTACTTGCTTCATCAAATCCCCGATGTTTC
CCT
Protein sequenceShow/hide protein sequence
MASFWYCSCSALIMAFMASPLLAALPSLPNPKPSTIASASPSFLTTTSSPFQELSPDIAPLLPSSGGQIPSATGSIPTIPSNPSPPNPDEFEAPGPDPSALSPFGLPGSF
AAPKPLPCSSISLLLLLLLLLFGFSLLLH