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Tan0010938 (gene) of Snake gourd v1 genome

Gene IDTan0010938
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG01:110595984..110596340
RNA-Seq ExpressionTan0010938
SyntenyTan0010938
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054593.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-1854.7Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MASKKVASN   AS+ Y   ITRSRSKG+    D+ ++V+ S I+K L E+ K  IV+K NPL+D S LA +  ++  + DVM VMMAD+     MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEI
        +KIN LMK VEERD EI
Subjt:  RKINLLMKVVEERDLEI
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-1955.56Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MASKK ASN   ASN Y   ITRSRSKG+    D+ ++V  S I+K L E+ K  IV+K+NPL+D S  + ++ ++ T+ DVM VMMAD+ P   MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEI
        RKIN LMK VEERD EI
Subjt:  RKINLLMKVVEERDLEI
KAA0066590.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-1750Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MA  KV S   AAS+TY   ITRSRSKG+    D+ +D+   +I+K L E+SK  IV+K+NPL++ S  A N+ ++  + D+M ++MAD+     MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEIA
        RKINLLMKV+EER  +IA
Subjt:  RKINLLMKVVEERDLEIA
XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.5e-1753.39Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MASKK AS   AAS+TY   ITRSRSKG+ I        +  +I+K L E+ K  IV+K+NPL++    A ++  +  + DVM VMMADV     MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEIA
        RKINLLMKVV+ERD EIA
Subjt:  RKINLLMKVVEERDLEIA
XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.5e-1753.39Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MASKK AS   AAS+TY   ITRSRSKG+ I        +  +I+K L E+ K  IV+K+NPL++    A ++  +  + DVM VMMADV     MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEIA
        RKINLLMKVV+ERD EIA
Subjt:  RKINLLMKVVEERDLEIA
TrEMBL top hitse value%identityAlignment
A0A5A7TIU8 Ty3-gypsy retrotransposon protein3.2e-1751.28Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MASKK AS    AS+ Y+  ITRS SKG+    DR ++V  S I+K L E+ K  IV+K+NPL+D S  A ++ ++    DVM VMMAD+     M EME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEI
        RK+N LMK+VEERD EI
Subjt:  RKINLLMKVVEERDLEI
A0A5A7UF60 Ty3-gypsy retrotransposon protein7.5e-1954.7Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MASKKVASN   AS+ Y   ITRSRSKG+    D+ ++V+ S I+K L E+ K  IV+K NPL+D S LA +  ++  + DVM VMMAD+     MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEI
        +KIN LMK VEERD EI
Subjt:  RKINLLMKVVEERDLEI
A0A5A7VCU1 Ty3-gypsy retrotransposon protein5.4e-1752.14Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MASKK AS    AS+ Y   ITR+RSKG+    D+ +DV  S I+K L E+ K  IV+K+N L+D S  A ++ ++  + DVM VMM D+    +MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEI
        RKIN LMKVVEERD EI
Subjt:  RKINLLMKVVEERDLEI
A0A5A7VHE3 Ty3-gypsy retrotransposon protein1.9e-1750Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MA  KV S   AAS+TY   ITRSRSKG+    D+ +D+   +I+K L E+SK  IV+K+NPL++ S  A N+ ++  + D+M ++MAD+     MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEIA
        RKINLLMKV+EER  +IA
Subjt:  RKINLLMKVVEERDLEIA
A0A5D3BY54 Ty3-gypsy retrotransposon protein5.2e-2055.56Show/hide
Query:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME
        MASKK ASN   ASN Y   ITRSRSKG+    D+ ++V  S I+K L E+ K  IV+K+NPL+D S  + ++ ++ T+ DVM VMMAD+ P   MAEME
Subjt:  MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEME

Query:  RKINLLMKVVEERDLEI
        RKIN LMK VEERD EI
Subjt:  RKINLLMKVVEERDLEI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAAGAAAGTTGCATCAAACATTGTTGCTGCAAGTAACACCTACATGTGTCTGATAACTCGCAGTCGTTCCAAAGGGGTTGAGATAAGTAATGATCGAACTGC
TGATGTAATGACAAGCAACATCATCAAACTACTGGATGAAACTTCCAAAGGCAAGATTGTCGTCAAAGATAACCCCCTGTTTGACCAATCAACTCTTGCTCCTAATCAAC
TGAGGGAGACAACAAATCAGGATGTAATGTTAGTAATGATGGCTGATGTGGACCCTTACGAAATAATGGCAGAGATGGAAAGAAAGATCAATCTCCTGATGAAGGTAGTA
GAAGAAAGAGATCTCGAAATCGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAAGAAAGTTGCATCAAACATTGTTGCTGCAAGTAACACCTACATGTGTCTGATAACTCGCAGTCGTTCCAAAGGGGTTGAGATAAGTAATGATCGAACTGC
TGATGTAATGACAAGCAACATCATCAAACTACTGGATGAAACTTCCAAAGGCAAGATTGTCGTCAAAGATAACCCCCTGTTTGACCAATCAACTCTTGCTCCTAATCAAC
TGAGGGAGACAACAAATCAGGATGTAATGTTAGTAATGATGGCTGATGTGGACCCTTACGAAATAATGGCAGAGATGGAAAGAAAGATCAATCTCCTGATGAAGGTAGTA
GAAGAAAGAGATCTCGAAATCGCCTAG
Protein sequenceShow/hide protein sequence
MASKKVASNIVAASNTYMCLITRSRSKGVEISNDRTADVMTSNIIKLLDETSKGKIVVKDNPLFDQSTLAPNQLRETTNQDVMLVMMADVDPYEIMAEMERKINLLMKVV
EERDLEIA