; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0010962 (gene) of Snake gourd v1 genome

Gene IDTan0010962
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionbiogenesis of lysosome-related organelles complex 1 subunit 2
Genome locationLG04:60614703..60615856
RNA-Seq ExpressionTan0010962
SyntenyTan0010962
Gene Ontology termsNA
InterPro domainsIPR019269 - Biogenesis of lysosome-related organelles complex-1, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607085.1 Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbita argyrosperma subsp. sororia]2.9e-5295.04Show/hide
Query:  MAEKEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEE QLPN DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMN+RVAEEYKG GDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHVSMLESKVLSVCQNT
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHVSMLESKVLSVCQNT

XP_004137147.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus]9.0e-5494.21Show/hide
Query:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS
        MA+KEE+LPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVIS
Subjt:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

XP_008455567.1 PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis melo]1.7e-5292.56Show/hide
Query:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS
        MA+KEE+LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG+GDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVIS
Subjt:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

XP_022949044.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata]1.7e-5295.87Show/hide
Query:  MAEKEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEE QLPN DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHVSMLESKVLSVCQNT
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHVSMLESKVLSVCQNT

XP_038880795.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]9.0e-5495.04Show/hide
Query:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS
        MA+KEEQ PNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLE+MNLRVAEEYKGFGDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVIS
Subjt:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

TrEMBL top hitse value%identityAlignment
A0A0A0KW18 Uncharacterized protein4.4e-5494.21Show/hide
Query:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS
        MA+KEE+LPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVIS
Subjt:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

A0A1S3C0T0 biogenesis of lysosome-related organelles complex 1 subunit 28.2e-5392.56Show/hide
Query:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS
        MA+KEE+LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG+GDVASGMRVFVEQLK+KSGGFDEYI+QIEKIE+QVTEFEAVIS
Subjt:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVCQNTP
        MLDKHVSMLESKVLSVCQNTP
Subjt:  MLDKHVSMLESKVLSVCQNTP

A0A6J1GBP4 biogenesis of lysosome-related organelles complex 1 subunit 28.2e-5395.87Show/hide
Query:  MAEKEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEE QLPN DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHVSMLESKVLSVCQNT
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHVSMLESKVLSVCQNT

A0A6J1KEZ0 biogenesis of lysosome-related organelles complex 1 subunit 28.2e-5395.87Show/hide
Query:  MAEKEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
        MAEKEE QLPN DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI
Subjt:  MAEKEE-QLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVI

Query:  SMLDKHVSMLESKVLSVCQNT
        SMLDKH+SMLESKVLSVCQN+
Subjt:  SMLDKHVSMLESKVLSVCQNT

W9R9H2 Uncharacterized protein4.4e-3873.5Show/hide
Query:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS
        MAEK +Q P+RDELAESLN+ FTSV  M+KS+L G++NQL LLEKMNLRV EEYKG+GDVASG+RVFVEQLK+KSG FDEY  +IE I+ QVTEFEAVIS
Subjt:  MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVIS

Query:  MLDKHVSMLESKVLSVC
        MLD++VS LESK+ S C
Subjt:  MLDKHVSMLESKVLSVC

SwissProt top hitse value%identityAlignment
F4K657 Biogenesis of lysosome-related organelles complex 1 subunit 21.0e-3165.38Show/hide
Query:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHVSML
        +RD+LAESL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+K+KSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+L
Subjt:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHVSML

Query:  ESKV
        ESK+
Subjt:  ESKV

Q32WR5 Biogenesis of lysosome-related organelles complex-1 subunit 28.0e-0527.52Show/hide
Query:  KEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD
        +E + P   ++ E   + F+ ++  +  +L  +S    LLE MN   + +Y    D+A  +   ++ L  K  G   Y++QI  IE QV   E     LD
Subjt:  KEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD

Query:  KHVSMLESK
         +   LE+K
Subjt:  KHVSMLESK

Q4R7C8 Biogenesis of lysosome-related organelles complex 1 subunit 24.7e-0527.52Show/hide
Query:  KEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD
        +E + P   ++ E   + F+ ++  +  +L  +S    LLE MN   + +Y    D+A  +   ++ L  K  G   Y++QI  IE QV   E     LD
Subjt:  KEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD

Query:  KHVSMLESK
         +   LE+K
Subjt:  KHVSMLESK

Q54Y67 Biogenesis of lysosome-related organelles complex 1 subunit 27.5e-1133.94Show/hide
Query:  LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHVS
        LP  ++L  S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF+  LK K   F  Y ++I +++  VT+ E  + +LD++  
Subjt:  LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHVS

Query:  MLESKVLSV
         LE KV ++
Subjt:  MLESKVLSV

Q6QNY1 Biogenesis of lysosome-related organelles complex 1 subunit 24.7e-0527.52Show/hide
Query:  KEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD
        +E + P   ++ E   + F+ ++  +  +L  +S    LLE MN   + +Y    D+A  +   ++ L  K  G   Y++QI  IE QV   E     LD
Subjt:  KEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLD

Query:  KHVSMLESK
         +   LE+K
Subjt:  KHVSMLESK

Arabidopsis top hitse value%identityAlignment
AT5G49550.1 Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.7.2e-3365.38Show/hide
Query:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHVSML
        +RD+LAESL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+K+KSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+L
Subjt:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHVSML

Query:  ESKV
        ESK+
Subjt:  ESKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAGAAAGAGGAACAATTGCCGAACAGGGACGAGCTTGCCGAGTCGCTCAACGAATTCTTCACCAGCGTATCCGAAATGATCAAATCGGACCTTCTTGGATCAAG
TAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCTGAGGAGTATAAAGGTTTTGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGGCAA
AGAGTGGTGGCTTTGATGAGTACATTAACCAGATTGAAAAAATAGAAAATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGCTGGAG
TCTAAAGTGTTGTCCGTTTGTCAAAACACGCCTTCATGA
mRNA sequenceShow/hide mRNA sequence
TTTTTATCTAACGGTATTAGTTTTTCTCGTTCGCTGTTATCTCTACCCATCGCTCGAGATCCACTAACATTTGCGGTTCTATGTTCCGACGAGACGACGGCGAGTGATCA
CAATTCCAGAAAAAAAAGAGTTTCGCGGTTCTAATCTTATTTCATGGCCGAGAAAGAGGAACAATTGCCGAACAGGGACGAGCTTGCCGAGTCGCTCAACGAATTCTTCA
CCAGCGTATCCGAAATGATCAAATCGGACCTTCTTGGATCAAGTAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCTGAGGAGTATAAAGGTTTTGGGGAT
GTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGGCAAAGAGTGGTGGCTTTGATGAGTACATTAACCAGATTGAAAAAATAGAAAATCAGGTGACTGAATTTGA
AGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGCTGGAGTCTAAAGTGTTGTCCGTTTGTCAAAACACGCCTTCATGAATAAATTTCCTATTATGTGTTCTAAATT
CAGAACGGTTCCTTCCAGAATATTTTTGCTTCAGTATTGTTCATATTGTCCAATCTTTTACAGTATCTCATTC
Protein sequenceShow/hide protein sequence
MAEKEEQLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHVSMLE
SKVLSVCQNTPS