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Tan0010993 (gene) of Snake gourd v1 genome

Gene IDTan0010993
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Genome locationLG10:61867804..61868893
RNA-Seq ExpressionTan0010993
SyntenyTan0010993
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607523.1 Succinate dehydrogenase assembly factor 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3283.51Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE
        MGVSS PKLSGMQKQVLSLYRAFLRAARSKS EDR++IESVVS EFRRNAK IDRK+FIYIEYLLRRGNKQLDQL+SPATV L++L LN   TQ SE
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE

XP_022932494.1 LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita moschata]1.6e-3283.51Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE
        MGVSS PKLSGMQKQVLSLY AFLRAARSKS EDR++IESVVS EFRRNAK IDRK+FIYIEYLLRRGNKQLDQL+SPATV L++L LN S TQ SE
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE

XP_022973401.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita maxima]9.2e-3383.67Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP
        MGVSS PKLSGMQ QVLSLYRAFLRAARSKS EDR+ IESVVS EFRRNAK ID KNFIYIEYLLRRG+KQLDQL+SPATV L+SL LN S TQ SEP
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP

XP_023525064.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo]2.0e-3587.76Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP
        MGVSS PKLSGMQ+QVLSLYRAFLRAARSKS EDRRQIESVVS EFRRNAK IDRKNFIYIEYLLRRGNKQLDQL+SPATV L+SL LN S TQ SEP
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP

XP_031263493.1 succinate dehydrogenase assembly factor 1A, mitochondrial [Pistacia vera]1.9e-3379.38Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE
        MG SSGP+LSGMQKQVLSLYR FLRAARSKS EDR Q+E++VSTEFR+N+KQ+DRKNFIYIEYLLRRG KQL+QLKSP TVRL+SLN++LS+T++SE
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE

TrEMBL top hitse value%identityAlignment
A0A2I4FRD8 succinate dehydrogenase assembly factor 1, mitochondrial-like isoform X24.2e-3174.49Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP
        MG SSGP+ SGMQKQVLSLYR FLRAARSKS ED ++IES+VS EFR N+KQIDRKNF+YIEYLLRRG KQLDQLKSP T+ L+SLN+++S T+  EP
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP

A0A2P5FEM4 LYR motif-containing protein7.1e-3174.23Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE
        M  SSGP+LSGMQKQVLSLYR FLRAARSKS E+R +IES+VSTEFRRNAKQ+DRKNFIYIEYLLRRG KQLDQLK+P T+ L+S ++ L +T+H++
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE

A0A6J1EX50 LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial7.6e-3383.51Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE
        MGVSS PKLSGMQKQVLSLY AFLRAARSKS EDR++IESVVS EFRRNAK IDRK+FIYIEYLLRRGNKQLDQL+SPATV L++L LN S TQ SE
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSE

A0A6J1I7F5 succinate dehydrogenase assembly factor 1, mitochondrial4.5e-3383.67Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP
        MGVSS PKLSGMQ QVLSLYRAFLRAARSKS EDR+ IESVVS EFRRNAK ID KNFIYIEYLLRRG+KQLDQL+SPATV L+SL LN S TQ SEP
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP

A0A7N2LDJ5 Uncharacterized protein3.2e-3176.53Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP
        MG SS PKLSGMQKQVLSLYR FLRAARSKS EDR +IES+VS EFRRN+KQ+DRKNF+YIEYLLRRG KQLDQLKSP TV L+SLN+++S T   +P
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP

SwissProt top hitse value%identityAlignment
A6ZYX9 Succinate dehydrogenase assembly factor 1, mitochondrial7.6e-0640.85Show/hide
Query:  KLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        +LSG+QK+VL LYRA +R A +K  E++    + +  EF +  + + RK+F  IE+LLR GNK++     P
Subjt:  KLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial7.6e-0647.14Show/hide
Query:  KLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKS
        +LS +Q+QVLSLYR  LRA R K   + R     V  EFR++A  + R + + IEYL RRG +QL  L+S
Subjt:  KLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKS

Q3E785 Succinate dehydrogenase assembly factor 1, mitochondrial7.6e-0640.85Show/hide
Query:  KLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        +LSG+QK+VL LYRA +R A +K  E++    + +  EF +  + + RK+F  IE+LLR GNK++     P
Subjt:  KLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Q54HG5 Succinate dehydrogenase assembly factor 1A, mitochondrial2.0e-0641.43Show/hide
Query:  SGMQKQVLSLYRAFLRAARSKSTED-RRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        SG+QK VLSLYR+FLR +  K  ++    I + + T+FR  A  I +++   IE LL +G +QL+Q++ P
Subjt:  SGMQKQVLSLYRAFLRAARSKSTED-RRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Q9US02 Succinate dehydrogenase assembly factor 1, mitochondrial2.2e-0540Show/hide
Query:  LSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        LSG+Q+QV+  YR  L AA++K      +  + V  EFR+N + I +++F YIE+LLR G +Q +    P
Subjt:  LSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein1.6e-2769.89Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRT
        MG S   KLSGMQKQVLSLYR FLRAARS+  EDR++IE +VSTEFR N+K++DRKNF YIEYLLR G KQLDQLKSPA V L+S+ +  S+T
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRT

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein1.6e-2769.89Show/hide
Query:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRT
        MG S   KLSGMQKQVLSLYR FLRAARS+  EDR++IE +VSTEFR N+K++DRKNF YIEYLLR G KQLDQLKSPA V L+S+ +  S+T
Subjt:  MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGTATCATCGGGGCCGAAGCTCTCAGGGATGCAAAAGCAAGTGCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCACCGAAGATCGACGCCA
GATTGAATCGGTTGTCTCCACCGAGTTCCGCCGGAACGCCAAGCAAATCGATCGCAAGAATTTCATCTACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATC
AACTTAAAAGCCCTGCAACTGTTCGATTGACATCACTCAATCTCAATTTGTCTCGAACGCAACATTCTGAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
TACTCTTTTGGTTGTTTTGCATACGGGGCCTAGACTTAGAGGCGACTTGACGAGGCTATATGGAGATGACTTGGAGTGTTCCTAGAGTTTTAGTGAGAGTCGCACTTTAG
GTTATGTTGTTAGACTAAACTTCAACATATGCATAATTTGGGAGGCGTTAAAATATTTATGAGTTTTGTAGGTTAAGCTATTAGGATCGTTAGATAGAGAAGCAACTACC
GAGAAGAAGGAAGAATGGGCGTATCATCGGGGCCGAAGCTCTCAGGGATGCAAAAGCAAGTGCTCAGTCTATACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCACC
GAAGATCGACGCCAGATTGAATCGGTTGTCTCCACCGAGTTCCGCCGGAACGCCAAGCAAATCGATCGCAAGAATTTCATCTACATCGAGTACCTTCTTCGTCGAGGTAA
CAAACAGTTGGATCAACTTAAAAGCCCTGCAACTGTTCGATTGACATCACTCAATCTCAATTTGTCTCGAACGCAACATTCTGAGCCTTGAAATTATTCGCAATTTTGTT
GGTGGATCCTCCCTCAACGATGAATCGCTCTTTTGATTTGCTTCATACTGAATTTTCTCCTTCATTATCTTGCTTTTTTTCAGTGATGATCAATTTTGCAGAACGATCGG
TAGCAGAATCCTTGAAATGTTTGAAATTGGGGATAATGGATTTTCCTCTTTTGTAAGGTTAAGGTATGAATTTTTTTCCATATATTTATTTTATTAAACAAAACATTAAC
TTAGACATGTCTATTTTATGGGAAAATAAAAAATAAAATAGAAAATAGAACATTTGACATGTCTATTACATCATTGTCATCATGTAAATTTTAGATTAAAATATAACTTT
GATCTCTC
Protein sequenceShow/hide protein sequence
MGVSSGPKLSGMQKQVLSLYRAFLRAARSKSTEDRRQIESVVSTEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLTSLNLNLSRTQHSEP