CuGenDBv2

Gene ID	Tan0011041
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNA polymerase II transcriptional coactivator KIWI-like
Genome location	LG03:34855609..34856441
RNA-Seq Expression	Tan0011041
Synteny	Tan0011041
Gene Ontology terms	GO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter (biological process) GO:0005634 - nucleus (cellular component) GO:0005667 - transcription factor complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003713 - transcription coactivator activity (molecular function)
InterPro domains	IPR003173 - Transcriptional coactivator p15 (PC4), C-terminal IPR009044 - ssDNA-binding transcriptional regulator IPR045125 - RNA polymerase II transcriptional coactivator Sub1/Tcp4-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6603408.1 RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-28

89.61

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        MSARGKRKDDEDH SEG+APPKKTF+KDS   DETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGKQMPGKK
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

KAG7033606.1 RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-28

89.61

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        MSARGKRKDDEDH SEG+APPKKTF+KDS   DETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGKQMPGKK
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

XP_022966500.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita maxima]

3.1e-29

84.34

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEV
        MSARGKRKDDEDHASEG+APPKKTFKKDS   +ETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGK+MPGKK F + +
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEV

XP_023518433.1 RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. pepo]

4.1e-29

90.91

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        MSARGKRKDDEDHASEG+APPKKTFKKDS   DETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGK+MPGKK
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

XP_023543026.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita pepo subsp. pepo]

1.2e-28

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFV
        MSARGKRK+DEDH SEG+APPKKTF+KDS   DETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGKQMPGKK ++
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EHI0 RNA polymerase II transcriptional coactivator KIWI-like

2.9e-28

88.31

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        MSARGKRKDDEDHASEG+APPKKT KKDS   +ETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGK+MPGKK
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

A0A6J1EXX8 RNA polymerase II transcriptional coactivator KIWI-like isoform X2

2.9e-28

88.31

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        MSARGKRKDDEDH  EG+APPKKTF+KDS   DETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGKQMPGKK
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

A0A6J1EYF6 RNA polymerase II transcriptional coactivator KIWI-like isoform X3

2.9e-28

88.31

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        MSARGKRKDDEDH  EG+APPKKTF+KDS   DETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGKQMPGKK
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

A0A6J1EYI2 RNA polymerase II transcriptional coactivator KIWI-like isoform X1

2.9e-28

88.31

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        MSARGKRKDDEDH  EG+APPKKTF+KDS   DETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGKQMPGKK
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

A0A6J1HRT2 RNA polymerase II transcriptional coactivator KIWI-like isoform X1

1.5e-29

84.34

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Query:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEV
        MSARGKRKDDEDHASEG+APPKKTFKKDS   +ETDEIV+CEISKNRRV VRNWQGKIVVDIREFYVKDGK+MPGKK F + +
Subjt:  MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEV

SwissProt top hits

e value

%identity

Alignment

O65154 RNA polymerase II transcriptional coactivator KIWI

6.2e-20

58.14

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Query:  MSARGKRKDDEDHASEGEA---PPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEV
        MS+RGKRKD++  AS+ E+    P K   K +D++D++D+IV+C ISKNRRV VRNW GKI +DIREFYVKDGK +PGKK   + V
Subjt:  MSARGKRKDDEDHASEGEA---PPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEV

O65155 RNA polymerase II transcriptional coactivator KELP

2.5e-05

35.21

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Query:  RKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        R+ +    ++ E    K   K + E D+  +++IC +S  RRV ++ ++GK +V IRE+Y KDGK++P  K
Subjt:  RKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

Arabidopsis top hits

e value

%identity

Alignment

AT5G09240.1 ssDNA-binding transcriptional regulator

9.2e-11

48.75

Show/hide

Query:  MSARGKRKDDEDHA------SEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMP
        MS  GKRKD++  A      SE  APPKK  K      DE ++I IC + KNRRV VRN  G+I + IR+F+VKDG  +P
Subjt:  MSARGKRKDDEDHA------SEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMP

AT5G09240.2 ssDNA-binding transcriptional regulator

9.2e-11

48.75

Show/hide

Query:  MSARGKRKDDEDHA------SEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMP
        MS  GKRKD++  A      SE  APPKK  K      DE ++I IC + KNRRV VRN  G+I + IR+F+VKDG  +P
Subjt:  MSARGKRKDDEDHA------SEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMP

AT5G09240.3 ssDNA-binding transcriptional regulator

9.2e-11

48.75

Show/hide

Query:  MSARGKRKDDEDHA------SEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMP
        MS  GKRKD++  A      SE  APPKK  K      DE ++I IC + KNRRV VRN  G+I + IR+F+VKDG  +P
Subjt:  MSARGKRKDDEDHA------SEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMP

AT5G09250.1 ssDNA-binding transcriptional regulator

4.4e-21

58.14

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Query:  MSARGKRKDDEDHASEGEA---PPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEV
        MS+RGKRKD++  AS+ E+    P K   K +D++D++D+IV+C ISKNRRV VRNW GKI +DIREFYVKDGK +PGKK   + V
Subjt:  MSARGKRKDDEDHASEGEA---PPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEV

AT5G09250.2 ssDNA-binding transcriptional regulator

7.5e-21

61.25

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Query:  MSARGKRKDDEDHASEGEA---PPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK
        MS+RGKRKD++  AS+ E+    P K   K +D++D++D+IV+C ISKNRRV VRNW GKI +DIREFYVKDGK +PGKK
Subjt:  MSARGKRKDDEDHASEGEA---PPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKK

Sequences

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CDS sequence

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mRNA sequence

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ATGTCTGCAAGAGGAAAGCGAAAGGACGACGAAGACCACGCATCCGAGGGAGAGGCTCCTCCGAAGAAGACATTTAAGAAAGATTCCGACGAAACCGACGAAACCGACGA
AATAGTCATCTGCGAGATTTCGAAGAACCGTAGGGTTAAGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAAATGC
CTGGAAAGAAAGAATTTGTGATAGAGGTTAGGAAATGATGGCAAACTGCATCTGTGGCTTTATTATAGGGTGTTTGGTTCAAAGTGAAGAGGTAATATTTTTGGTTGTTT
GTATGGAATCTTATGAAGTTTGGTGTGTATATAATTCATTTTATGAACAATATCTTTCTCTTGGCTTCTGTTATGACAAAATTTAGTGAGGTTCCAAATTTTTGTGATCC
TTCACGGATTTTTTTTTCCTATACTTTTCTTATCTAGTTTATGTCAAATAGTTTGTTGGAAACATTTGGGGAAGAATGAATACAAAGGCGATGAAAGAATAGATATTAAA
GGGTGGGATGAAG

Protein sequence

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MSARGKRKDDEDHASEGEAPPKKTFKKDSDETDETDEIVICEISKNRRVKVRNWQGKIVVDIREFYVKDGKQMPGKKEFVIEVRK

Tan0011041 (gene) of Snake gourd v1 genome