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Tan0011060 (gene) of Snake gourd v1 genome

Gene IDTan0011060
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPLASMODESMATA CALLOSE-BINDING PROTEIN 2
Genome locationLG03:79752858..79754247
RNA-Seq ExpressionTan0011060
SyntenyTan0011060
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3452198.1 Transcription factor bHLH144 [Gossypium australe]4.4e-1663.83Show/hide
Query:  MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        MPW  S VN    CVRL G   I F  LS+  G F     VGGVRM I VT KRYRA+KEVGK+ MSVG+IA YY+++QVCQAEYFRQLLKPVT
Subjt:  MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

KAF4360142.1 hypothetical protein F8388_000011, partial [Cannabis sativa]5.4e-1481.82Show/hide
Query:  LVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        LVGGVRM I ++ KRYRAVKEVGK+ MSVG+IA YYQ+MQVCQAEYFRQLLKPVT
Subjt:  LVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

PPR97774.1 hypothetical protein GOBAR_AA22895 [Gossypium barbadense]4.1e-1466.67Show/hide
Query:  NLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        N  I F  LS+  G F     VGGVRM I VT KRYRA+KEVGK+ MSVG+IA YY+++QVCQAEYFRQLLKPVT
Subjt:  NLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

PQQ06331.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus yedoensis var. nudiflora]2.9e-2063.83Show/hide
Query:  MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        MPWTSS VNYS  CVRL                  +F  +V GVRM IGVT KRYRA+KEVGK+ MSVG+IA YYQ+MQVCQAEYFRQLLKPVT
Subjt:  MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

XP_020417230.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus persica]3.2e-1482.14Show/hide
Query:  LLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        L+V GVRM IGVT KRYRA+KEVGK+ MSVG+IA YYQ+MQVCQAEYFRQLLKPVT
Subjt:  LLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

TrEMBL top hitse value%identityAlignment
A0A251PKI6 Uncharacterized protein7.1e-1283.67Show/hide
Query:  MCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        M IGVT KRYRA+KEVGK+ MSVG+IA YYQ+MQVCQAEYFRQLLKPVT
Subjt:  MCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

A0A2P5X359 Uncharacterized protein2.0e-1466.67Show/hide
Query:  NLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        N  I F  LS+  G F     VGGVRM I VT KRYRA+KEVGK+ MSVG+IA YY+++QVCQAEYFRQLLKPVT
Subjt:  NLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

A0A314YMT4 PLASMODESMATA CALLOSE-BINDING PROTEIN 21.4e-2063.83Show/hide
Query:  MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        MPWTSS VNYS  CVRL                  +F  +V GVRM IGVT KRYRA+KEVGK+ MSVG+IA YYQ+MQVCQAEYFRQLLKPVT
Subjt:  MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

A0A5B6U445 Transcription factor bHLH1442.1e-1663.83Show/hide
Query:  MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        MPW  S VN    CVRL G   I F  LS+  G F     VGGVRM I VT KRYRA+KEVGK+ MSVG+IA YY+++QVCQAEYFRQLLKPVT
Subjt:  MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

A0A7J6ENW5 Uncharacterized protein2.6e-1481.82Show/hide
Query:  LVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        LVGGVRM I ++ KRYRAVKEVGK+ MSVG+IA YYQ+MQVCQAEYFRQLLKPVT
Subjt:  LVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29951.1 conserved peptide upstream open reading frame 355.2e-0759.18Show/hide
Query:  MCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT
        MCI    K  R++KE+G   M+   IA  YQ +QVCQAEYFRQLLKPVT
Subjt:  MCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTGGACATCCTCCTTGGTGAATTACAGCAGCAAGTGTGTTCGCTTGGGGGGAAATTTAAACATTGACTTTGCTGGTCTGTCTTATTTTTGCGGCTATTTCATCTT
TACATTACTGGTTGGAGGAGTGAGAATGTGCATTGGTGTAACGGGAAAGAGATACAGAGCTGTCAAGGAAGTTGGGAAAGTTAACATGAGTGTTGGAATTATTGCCTACT
ACTACCAAGTGATGCAAGTTTGTCAGGCCGAGTATTTTCGCCAATTGCTAAAACCTGTCACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGTGGACATCCTCCTTGGTGAATTACAGCAGCAAGTGTGTTCGCTTGGGGGGAAATTTAAACATTGACTTTGCTGGTCTGTCTTATTTTTGCGGCTATTTCATCTT
TACATTACTGGTTGGAGGAGTGAGAATGTGCATTGGTGTAACGGGAAAGAGATACAGAGCTGTCAAGGAAGTTGGGAAAGTTAACATGAGTGTTGGAATTATTGCCTACT
ACTACCAAGTGATGCAAGTTTGTCAGGCCGAGTATTTTCGCCAATTGCTAAAACCTGTCACGTAG
Protein sequenceShow/hide protein sequence
MPWTSSLVNYSSKCVRLGGNLNIDFAGLSYFCGYFIFTLLVGGVRMCIGVTGKRYRAVKEVGKVNMSVGIIAYYYQVMQVCQAEYFRQLLKPVT