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Tan0011068 (gene) of Snake gourd v1 genome

Gene IDTan0011068
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H-like domain containing protein
Genome locationLG03:68412280..68412651
RNA-Seq ExpressionTan0011068
SyntenyTan0011068
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX61250.1 cytochrome p450, partial [Trifolium pratense]2.0e-0827.43Show/hide
Query:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST
        T  G ++RD  G+ ++A   W +G    +  E +A++K +E  + +G+S +  ETD++++V A+H+          ++  + N+M+ N    + +  R  
Subjt:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST

Query:  NKVAYNLASWALS
        N VA+ LA  A+S
Subjt:  NKVAYNLASWALS

PNX71244.1 ribonuclease H, partial [Trifolium pratense]3.4e-0827.43Show/hide
Query:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST
        T  G ++RD  G+ ++A   W +G    +  E++A++K +E  + +G+S +  ETD++++V A+H+         +++  I  +M+ N    + +  R  
Subjt:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST

Query:  NKVAYNLASWALS
        N VA+ LA  A+S
Subjt:  NKVAYNLASWALS

PON66239.1 Ribonuclease H-like domain containing protein [Parasponia andersonii]1.2e-0834.78Show/hide
Query:  LGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNK
        LG ++RD  GK+++A              E + + KG+++A   GL  L VE+DA  +V  I   S  +   G+I  EI+N++        SY+P S NK
Subjt:  LGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNK

Query:  VAYNLASWALSNKED
        VA+ LA W +SN  D
Subjt:  VAYNLASWALSNKED

XP_023875782.1 uncharacterized protein LOC111988222 [Quercus suber]1.7e-0729.73Show/hide
Query:  LGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNK
        LG I+RD EG +I++   W   +L+P+  EALA  K +E A   G+S   ++ ++  ++  ++  + +L P G+++++  NV      +  S+  R  N 
Subjt:  LGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNK

Query:  VAYNLASWALS
        + YNLA  A++
Subjt:  VAYNLASWALS

XP_038704726.1 uncharacterized protein LOC120000672 [Tripterygium wilfordii]3.1e-0938.32Show/hide
Query:  LGAIIRDSEGKMIIA-SECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTN
        +GA+IRD  G++  A SEC   G   P   +A A++KG ++A   G+SNL +E+D+  +V AI   + +L P G IL++IR+++     + L Y  R  N
Subjt:  LGAIIRDSEGKMIIA-SECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTN

Query:  KVAYNLA
        +VA+ LA
Subjt:  KVAYNLA

TrEMBL top hitse value%identityAlignment
A0A2K3K4P0 Cytochrome p450 (Fragment)9.6e-0927.43Show/hide
Query:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST
        T  G ++RD  G+ ++A   W +G    +  E +A++K +E  + +G+S +  ETD++++V A+H+          ++  + N+M+ N    + +  R  
Subjt:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST

Query:  NKVAYNLASWALS
        N VA+ LA  A+S
Subjt:  NKVAYNLASWALS

A0A2K3KY94 Ribonuclease H (Fragment)1.6e-0827.43Show/hide
Query:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST
        T  G ++RD  G+ ++A   W +G    +  E++A++K +E  + +G+S +  ETD++++V A+H+         +++  I  +M+ N    + +  R  
Subjt:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST

Query:  NKVAYNLASWALS
        N VA+ LA  A+S
Subjt:  NKVAYNLASWALS

A0A2P5CYX0 Ribonuclease H-like domain containing protein5.6e-0934.78Show/hide
Query:  LGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNK
        LG ++RD  GK+++A              E + + KG+++A   GL  L VE+DA  +V  I   S  +   G+I  EI+N++        SY+P S NK
Subjt:  LGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNK

Query:  VAYNLASWALSNKED
        VA+ LA W +SN  D
Subjt:  VAYNLASWALSNKED

A0A392M116 Cytochrome P450 (Fragment)1.4e-0731.86Show/hide
Query:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST
        T  G  IRD  G+ I+A   W  G    L  EA+A+L+ +++   +G+S++  ETD++ +V AIH           I+  I N+++ N    + +  R  
Subjt:  TRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRST

Query:  NKVAYNLASWALS
        N VA+ LA  A+S
Subjt:  NKVAYNLASWALS

A0A803L195 Uncharacterized protein6.2e-0834.78Show/hide
Query:  GAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNKV
        GA++ DS G++ +A+   F+ R EP+ AEA A+L G++MA   G + L VETD + ++  I           +IL++I +V     F+  S+  R  NKV
Subjt:  GAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNKV

Query:  AYNLA---SWALSNK
        A+ LA    W  + K
Subjt:  AYNLA---SWALSNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGGATACAAGGTTGGGGGCGATCATCCGTGACTCGGAAGGGAAAATGATCATTGCGAGTGAATGTTGGTTTCAAGGAAGACTGGAGCCTCTATCGGCCGAAGC
TTTGGCGATCCTCAAAGGTATGGAAATGGCTGCTGCGAAGGGACTGTCGAATTTGTGGGTAGAGACTGATGCCCGGGCGATGGTTAAGGCAATACACAAACACTCTCTTC
AATTGGGCCCTCAAGGAATGATTTTAGAAGAGATTAGAAATGTCATGATTAAAAATAGGTTCATTGGGCTTAGTTACAACCCAAGGTCCACGAATAAAGTGGCCTATAAT
TTGGCAAGTTGGGCTCTTTCTAATAAGGAGGACCAAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTGGATACAAGGTTGGGGGCGATCATCCGTGACTCGGAAGGGAAAATGATCATTGCGAGTGAATGTTGGTTTCAAGGAAGACTGGAGCCTCTATCGGCCGAAGC
TTTGGCGATCCTCAAAGGTATGGAAATGGCTGCTGCGAAGGGACTGTCGAATTTGTGGGTAGAGACTGATGCCCGGGCGATGGTTAAGGCAATACACAAACACTCTCTTC
AATTGGGCCCTCAAGGAATGATTTTAGAAGAGATTAGAAATGTCATGATTAAAAATAGGTTCATTGGGCTTAGTTACAACCCAAGGTCCACGAATAAAGTGGCCTATAAT
TTGGCAAGTTGGGCTCTTTCTAATAAGGAGGACCAAATCTGA
Protein sequenceShow/hide protein sequence
MSLDTRLGAIIRDSEGKMIIASECWFQGRLEPLSAEALAILKGMEMAAAKGLSNLWVETDARAMVKAIHKHSLQLGPQGMILEEIRNVMIKNRFIGLSYNPRSTNKVAYN
LASWALSNKEDQI