; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0011105 (gene) of Snake gourd v1 genome

Gene IDTan0011105
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H
Genome locationLG02:13975724..13989254
RNA-Seq ExpressionTan0011105
SyntenyTan0011105
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037781.1 uncharacterized protein E6C27_scaffold471G00160 [Cucumis melo var. makuwa]6.5e-2335.71Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL-TTKKGSTLKKNEGDVST----------------------------------
        MF+NTL++PFY+ MIG+ASTN  DI+ IGERIE+GIKHGR+++AT      KKG+  KK E +V +                                  
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL-TTKKGSTLKKNEGDVST----------------------------------

Query:  -------------IVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTV--AQSRGFYPDNEVGTI
                     IV PME  F+ L   GYVS EYL P+   E Y+++  C F+    GH + +C  F  +VQ+LMD K+LTV   Q +    D+++  +
Subjt:  -------------IVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTV--AQSRGFYPDNEVGTI

Query:  EGLSSKKVGLNVPFIPLTTFIAKS
            S+K    +P  PLT F  +S
Subjt:  EGLSSKKVGLNVPFIPLTTFIAKS

XP_022131653.1 uncharacterized protein LOC111004780 [Momordica charantia]4.9e-3143.81Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL--------------------------------------------TTKKGSTL
        MFINTLK PFYD MIGSASTNFS+IMTIGE IE+G+KHG+I+  T+ L                                            +TK  + L
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL--------------------------------------------TTKKGSTL

Query:  K-----------KNEGDVSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTVAQSR
        K           +++  V  I  P+E+LF+ LL +GYVSVEYL P+   +EY+ + TC FH GAKGHSL++C  F KRVQEL+D KVLTV +S+
Subjt:  K-----------KNEGDVSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTVAQSR

XP_022131653.1 uncharacterized protein LOC111004780 [Momordica charantia]3.8e-0746.05Show/hide
Query:  FGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPLYHSFKSAGVLHPKSCGDYAIAAVIEE-EEIGPWI
        FGL YKP+R  +IRV+  EK KRL+R EN E ++    +  L HSF+SAG++H +     A+A V EE E++GP++
Subjt:  FGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPLYHSFKSAGVLHPKSCGDYAIAAVIEE-EEIGPWI

XP_022131653.1 uncharacterized protein LOC111004780 [Momordica charantia]1.1e-3038.87Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRI-SQATKSLTTKKGSTLKKNEGD-------------------------------------
        MFINTLK PFYD MIGSASTNFSDIMTIGERIE+G++H RI S A + L  KK S  KK EG+                                     
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRI-SQATKSLTTKKGSTLKKNEGD-------------------------------------

Query:  ----------------------------------------------------VSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK
                                                            V+ I TP E+LF+ILL +GYVSVEYL P+   +EY+++LTC FH GAK
Subjt:  ----------------------------------------------------VSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK

Query:  GHSLDRCYHFCKRVQELMDMKVLTVA---QSRGFYPDNEVGTIEGLS
        GHSL++C  F  +VQEL+D K+LTVA   Q +G     +V   EG S
Subjt:  GHSLDRCYHFCKRVQELMDMKVLTVA---QSRGFYPDNEVGTIEGLS

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]5.5e-3036.19Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRI-SQATKSLTTKKGSTLKKNEGD-------------------------------------
        MFINTLK PFYD M+GSASTNFSDIM IGERIE+G++HGRI S A + L  KK S  KK EG+                                     
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRI-SQATKSLTTKKGSTLKKNEGD-------------------------------------

Query:  ----------------------------------------------------VSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK
                                                            V+ I TPME+LF+ILL +GYVSVEYL P+   + Y+++LTC FH GAK
Subjt:  ----------------------------------------------------VSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK

Query:  GHSLDRCYHFCKRVQELMDMKVLTVA---QSRGFYPDNEVGTIEGLSSKKVGLNVPFIPLTTFIAKSP
        GH+L++C  F   VQEL+D K+LTVA   Q +G     +V   EG  ++     +    LT F ++ P
Subjt:  GHSLDRCYHFCKRVQELMDMKVLTVA---QSRGFYPDNEVGTIEGLSSKKVGLNVPFIPLTTFIAKSP

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]6.3e-1853.33Show/hide
Query:  FGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPLYHSFKSAGVLHPKSCGDYAIAAVIEE-EEIGPWIYPCPKNFKLDNWSV
        FGLGYKP+R D+IRV+  EK KRL+R EN E ++    + PL HSF+SAG +H +  G   +AAV EE E++ P++YPCP  F+L NWSV
Subjt:  FGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPLYHSFKSAGVLHPKSCGDYAIAAVIEE-EEIGPWIYPCPKNFKLDNWSV

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]6.5e-2335.71Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL-TTKKGSTLKKNEGDVST----------------------------------
        MF+NTL++PFY+ MIG+ASTN  DI+ IGERIE+GIKHGR+++AT      KKG+  KK E +V +                                  
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL-TTKKGSTLKKNEGDVST----------------------------------

Query:  -------------IVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTV--AQSRGFYPDNEVGTI
                     IV PME  F+ L   GYVS EYL P+   E Y+++  C F+    GH + +C  F  +VQ+LMD K+LTV   Q +    D+++  +
Subjt:  -------------IVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTV--AQSRGFYPDNEVGTI

Query:  EGLSSKKVGLNVPFIPLTTFIAKS
            S+K    +P  PLT F  +S
Subjt:  EGLSSKKVGLNVPFIPLTTFIAKS

TrEMBL top hitse value%identityAlignment
A0A5A7T858 Uncharacterized protein3.1e-2335.71Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL-TTKKGSTLKKNEGDVST----------------------------------
        MF+NTL++PFY+ MIG+ASTN  DI+ IGERIE+GIKHGR+++AT      KKG+  KK E +V +                                  
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL-TTKKGSTLKKNEGDVST----------------------------------

Query:  -------------IVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTV--AQSRGFYPDNEVGTI
                     IV PME  F+ L   GYVS EYL P+   E Y+++  C F+    GH + +C  F  +VQ+LMD K+LTV   Q +    D+++  +
Subjt:  -------------IVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTV--AQSRGFYPDNEVGTI

Query:  EGLSSKKVGLNVPFIPLTTFIAKS
            S+K    +P  PLT F  +S
Subjt:  EGLSSKKVGLNVPFIPLTTFIAKS

A0A6J1BU14 uncharacterized protein LOC1110047802.4e-3143.81Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL--------------------------------------------TTKKGSTL
        MFINTLK PFYD MIGSASTNFS+IMTIGE IE+G+KHG+I+  T+ L                                            +TK  + L
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL--------------------------------------------TTKKGSTL

Query:  K-----------KNEGDVSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTVAQSR
        K           +++  V  I  P+E+LF+ LL +GYVSVEYL P+   +EY+ + TC FH GAKGHSL++C  F KRVQEL+D KVLTV +S+
Subjt:  K-----------KNEGDVSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTVAQSR

A0A6J1BU14 uncharacterized protein LOC1110047801.8e-0746.05Show/hide
Query:  FGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPLYHSFKSAGVLHPKSCGDYAIAAVIEE-EEIGPWI
        FGL YKP+R  +IRV+  EK KRL+R EN E ++    +  L HSF+SAG++H +     A+A V EE E++GP++
Subjt:  FGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPLYHSFKSAGVLHPKSCGDYAIAAVIEE-EEIGPWI

A0A6J1BU14 uncharacterized protein LOC1110047805.3e-3138.87Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRI-SQATKSLTTKKGSTLKKNEGD-------------------------------------
        MFINTLK PFYD MIGSASTNFSDIMTIGERIE+G++H RI S A + L  KK S  KK EG+                                     
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRI-SQATKSLTTKKGSTLKKNEGD-------------------------------------

Query:  ----------------------------------------------------VSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK
                                                            V+ I TP E+LF+ILL +GYVSVEYL P+   +EY+++LTC FH GAK
Subjt:  ----------------------------------------------------VSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK

Query:  GHSLDRCYHFCKRVQELMDMKVLTVA---QSRGFYPDNEVGTIEGLS
        GHSL++C  F  +VQEL+D K+LTVA   Q +G     +V   EG S
Subjt:  GHSLDRCYHFCKRVQELMDMKVLTVA---QSRGFYPDNEVGTIEGLS

A0A6J1CNY7 Ribonuclease H2.6e-3036.19Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRI-SQATKSLTTKKGSTLKKNEGD-------------------------------------
        MFINTLK PFYD M+GSASTNFSDIM IGERIE+G++HGRI S A + L  KK S  KK EG+                                     
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRI-SQATKSLTTKKGSTLKKNEGD-------------------------------------

Query:  ----------------------------------------------------VSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK
                                                            V+ I TPME+LF+ILL +GYVSVEYL P+   + Y+++LTC FH GAK
Subjt:  ----------------------------------------------------VSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK

Query:  GHSLDRCYHFCKRVQELMDMKVLTVA---QSRGFYPDNEVGTIEGLSSKKVGLNVPFIPLTTFIAKSP
        GH+L++C  F   VQEL+D K+LTVA   Q +G     +V   EG  ++     +    LT F ++ P
Subjt:  GHSLDRCYHFCKRVQELMDMKVLTVA---QSRGFYPDNEVGTIEGLSSKKVGLNVPFIPLTTFIAKSP

A0A6J1CNY7 Ribonuclease H3.0e-1853.33Show/hide
Query:  FGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPLYHSFKSAGVLHPKSCGDYAIAAVIEE-EEIGPWIYPCPKNFKLDNWSV
        FGLGYKP+R D+IRV+  EK KRL+R EN E ++    + PL HSF+SAG +H +  G   +AAV EE E++ P++YPCP  F+L NWSV
Subjt:  FGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPLYHSFKSAGVLHPKSCGDYAIAAVIEE-EEIGPWIYPCPKNFKLDNWSV

A0A6J1CNY7 Ribonuclease H3.1e-2335.71Show/hide
Query:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL-TTKKGSTLKKNEGDVST----------------------------------
        MF+NTL++PFY+ MIG+ASTN  DI+ IGERIE+GIKHGR+++AT      KKG+  KK E +V +                                  
Subjt:  MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSL-TTKKGSTLKKNEGDVST----------------------------------

Query:  -------------IVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTV--AQSRGFYPDNEVGTI
                     IV PME  F+ L   GYVS EYL P+   E Y+++  C F+    GH + +C  F  +VQ+LMD K+LTV   Q +    D+++  +
Subjt:  -------------IVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAKGHSLDRCYHFCKRVQELMDMKVLTV--AQSRGFYPDNEVGTI

Query:  EGLSSKKVGLNVPFIPLTTFIAKS
            S+K    +P  PLT F  +S
Subjt:  EGLSSKKVGLNVPFIPLTTFIAKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATCAATACCCTAAAGTCTCCATTTTATGATCATATGATAGGGAGTGCTTCAACGAATTTCTCAGACATCATGACGATTGGGGAAAGAATTGAGTTTGGAATCAA
GCACGGTAGGATAAGTCAGGCCACAAAATCTTTGACAACCAAAAAAGGATCCACTTTGAAGAAAAATGAGGGAGATGTTTCAACAATTGTGACGCCGATGGAAAAACTTT
TCAAAATTCTACTTGCTAATGGCTACGTATCTGTAGAATACTTATACCCAGATTCTACTCAAGAAGAATATAATGATAACTTGACTTGTTCATTTCACTTTGGGGCAAAA
GGTCATTCTTTGGATCGATGTTACCACTTTTGCAAGAGGGTCCAAGAATTGATGGACATGAAGGTTCTTACTGTTGCACAATCTCGTGGCTTTTATCCAGATAATGAAGT
GGGCACTATAGAAGGACTTTCCTCTAAAAAGGTTGGTTTAAATGTGCCTTTTATACCTCTCACAACTTTTATCGCGAAAAGCCCACCCTACCTATTTGGGTTGGGGTACA
AACCCAATAGAATGGATATGATCAGAGTACAAAAGCAGGAAAAGGAAAAACGGTTAGCAAGATTGGAAAATCGTGAACTAGAGCATCAGGAAGAAAGGATTCTACCTCTC
TACCATTCTTTCAAAAGTGCTGGTGTACTTCATCCAAAGAGTTGTGGAGATTATGCAATCGCAGCCGTGATTGAAGAAGAAGAAATAGGCCCATGGATCTACCCATGCCC
AAAGAATTTCAAGCTTGACAATTGGAGTGTTATTGAATCGCCGTTATTTGCTGTTAAACTGTCAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCATCAATACCCTAAAGTCTCCATTTTATGATCATATGATAGGGAGTGCTTCAACGAATTTCTCAGACATCATGACGATTGGGGAAAGAATTGAGTTTGGAATCAA
GCACGGTAGGATAAGTCAGGCCACAAAATCTTTGACAACCAAAAAAGGATCCACTTTGAAGAAAAATGAGGGAGATGTTTCAACAATTGTGACGCCGATGGAAAAACTTT
TCAAAATTCTACTTGCTAATGGCTACGTATCTGTAGAATACTTATACCCAGATTCTACTCAAGAAGAATATAATGATAACTTGACTTGTTCATTTCACTTTGGGGCAAAA
GGTCATTCTTTGGATCGATGTTACCACTTTTGCAAGAGGGTCCAAGAATTGATGGACATGAAGGTTCTTACTGTTGCACAATCTCGTGGCTTTTATCCAGATAATGAAGT
GGGCACTATAGAAGGACTTTCCTCTAAAAAGGTTGGTTTAAATGTGCCTTTTATACCTCTCACAACTTTTATCGCGAAAAGCCCACCCTACCTATTTGGGTTGGGGTACA
AACCCAATAGAATGGATATGATCAGAGTACAAAAGCAGGAAAAGGAAAAACGGTTAGCAAGATTGGAAAATCGTGAACTAGAGCATCAGGAAGAAAGGATTCTACCTCTC
TACCATTCTTTCAAAAGTGCTGGTGTACTTCATCCAAAGAGTTGTGGAGATTATGCAATCGCAGCCGTGATTGAAGAAGAAGAAATAGGCCCATGGATCTACCCATGCCC
AAAGAATTTCAAGCTTGACAATTGGAGTGTTATTGAATCGCCGTTATTTGCTGTTAAACTGTCAGAGTAA
Protein sequenceShow/hide protein sequence
MFINTLKSPFYDHMIGSASTNFSDIMTIGERIEFGIKHGRISQATKSLTTKKGSTLKKNEGDVSTIVTPMEKLFKILLANGYVSVEYLYPDSTQEEYNDNLTCSFHFGAK
GHSLDRCYHFCKRVQELMDMKVLTVAQSRGFYPDNEVGTIEGLSSKKVGLNVPFIPLTTFIAKSPPYLFGLGYKPNRMDMIRVQKQEKEKRLARLENRELEHQEERILPL
YHSFKSAGVLHPKSCGDYAIAAVIEEEEIGPWIYPCPKNFKLDNWSVIESPLFAVKLSE