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Tan0011107 (gene) of Snake gourd v1 genome

Gene IDTan0011107
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationLG08:1040340..1040749
RNA-Seq ExpressionTan0011107
SyntenyTan0011107
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586449.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]1.7e-4981.97Show/hide
Query:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSV-GDC
        MAAV PE TRSAFAASYIMDLESMFDLDTVLTGADDYYN + IT PPSV VAD PTV  DD+CAVCME FR DEGGKQIPCGHVYHQ CISSWLSV GDC
Subjt:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSV-GDC

Query:  CPLCRRHVSSGDKTEAPKTVQV
        CPLCR HVSS +K+E  K VQV
Subjt:  CPLCRRHVSSGDKTEAPKTVQV

KAG7021303.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-5082.79Show/hide
Query:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSV-GDC
        MAAV PE TRSAFAASYIMDLESMFDLDTVLTGADDYYN + IT PPSV VADLPTV  DD+CAVCME FR DEGGKQIPCGHVYHQ CISSWLSV GDC
Subjt:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSV-GDC

Query:  CPLCRRHVSSGDKTEAPKTVQV
        CPLCR HVSS +K+E  K VQV
Subjt:  CPLCRRHVSSGDKTEAPKTVQV

XP_022938297.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]2.3e-4981.97Show/hide
Query:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSV-GDC
        MAAV PE TRSAFAA YIMDLESMFDLDTVLTGADDYYN + IT PPSV VADLPTV  DD+CAVCME FR DEGGKQIPCGHVYHQ CISSWLSV GDC
Subjt:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSV-GDC

Query:  CPLCRRHVSSGDKTEAPKTVQV
        CPLCR HVSS +K+E  K VQV
Subjt:  CPLCRRHVSSGDKTEAPKTVQV

XP_022965415.1 E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima]1.7e-4981.97Show/hide
Query:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSE-TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDC
        MAAV PE TRSAFAASYIMDLESMFDLDTVLTGADDYYN +  IT PPSV V+DLPTV  DD+CAVCME FR DEGGKQIPCGHVYHQ+CISSWLSVGDC
Subjt:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSE-TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDC

Query:  CPLCRRHVSSGDKTEAPKTVQV
        CPLCR HVSS +K E  K VQV
Subjt:  CPLCRRHVSSGDKTEAPKTVQV

XP_023537996.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]2.4e-5183.47Show/hide
Query:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCC
        MAAV PE TRSAFAASYIMDLESMFDLDTVLTGADDYYN + IT PPSV VADLPTV  DD+CAVCME FR DEGGKQIPCGHVYHQ CISSWLSVGDCC
Subjt:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCC

Query:  PLCRRHVSSGDKTEAPKTVQV
        PLCR HVSS +K+E  K VQV
Subjt:  PLCRRHVSSGDKTEAPKTVQV

TrEMBL top hitse value%identityAlignment
A0A0A0LEZ1 RING-type domain-containing protein2.2e-4273.68Show/hide
Query:  TRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTV-TADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHV
        T + +AASYIMD+ESMFDLDTVLTGADD+Y   T+ APP V VA+LPTV  ADD+CAVCME F PDEGGKQIPCGHVYHQ+C+SSWLS+ D CPLCR H+
Subjt:  TRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTV-TADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHV

Query:  SSGDKTEAPKTVQV
        + GDKTE  KTVQV
Subjt:  SSGDKTEAPKTVQV

A0A5A7V793 RING-H2 finger protein ATL5-like9.0e-4476.11Show/hide
Query:  TRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVS
        T +  AA YIMD+ESMFDLDTVL+GADD+Y   T  APP V VADLPTV  DD CAVCME F PDEGGKQIPCGHVYHQ+CISSWLSVGD CPLCRRH++
Subjt:  TRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVS

Query:  SGDKTEAPKTVQV
         GDKTE  KTVQV
Subjt:  SGDKTEAPKTVQV

A0A6J1FDN7 E3 ubiquitin-protein ligase RING1-like1.1e-4981.97Show/hide
Query:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSV-GDC
        MAAV PE TRSAFAA YIMDLESMFDLDTVLTGADDYYN + IT PPSV VADLPTV  DD+CAVCME FR DEGGKQIPCGHVYHQ CISSWLSV GDC
Subjt:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSV-GDC

Query:  CPLCRRHVSSGDKTEAPKTVQV
        CPLCR HVSS +K+E  K VQV
Subjt:  CPLCRRHVSSGDKTEAPKTVQV

A0A6J1G511 E3 ubiquitin-protein ligase RING1-like2.9e-2657.98Show/hide
Query:  AVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPL
        +VS ETTR+  AA+Y   +E +FDLD VL+GADD+   + I+A  S+ VADLPTV A D+CAVC+E FRPDE GKQIPCGHVYH++CISSWL+V +CCPL
Subjt:  AVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPL

Query:  CRRHVSSGDKTEAPKTVQV
        CR  + +G   E+P +  +
Subjt:  CRRHVSSGDKTEAPKTVQV

A0A6J1HNM2 E3 ubiquitin-protein ligase RNF181-like8.5e-5081.97Show/hide
Query:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSE-TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDC
        MAAV PE TRSAFAASYIMDLESMFDLDTVLTGADDYYN +  IT PPSV V+DLPTV  DD+CAVCME FR DEGGKQIPCGHVYHQ+CISSWLSVGDC
Subjt:  MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSE-TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDC

Query:  CPLCRRHVSSGDKTEAPKTVQV
        CPLCR HVSS +K E  K VQV
Subjt:  CPLCRRHVSSGDKTEAPKTVQV

SwissProt top hitse value%identityAlignment
O22197 Probable E3 ubiquitin-protein ligase RHC1A3.1e-0937.31Show/hide
Query:  ITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSS
        I A P++++A     ++D  C VC + F      KQ+PC H+YH +CI  WL   + CP+CR+ + S
Subjt:  ITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSS

Q94AK4 E3 ubiquitin-protein ligase RZF12.4e-0931.65Show/hide
Query:  TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSGDKTEAPKTVQ
        +I A P++++      ++D  C VC + F      KQ+PC H+YH +CI  WL   + CP+CR+ + S   + + ++ Q
Subjt:  TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSGDKTEAPKTVQ

Q9SNB6 E3 ubiquitin-protein ligase RDUF11.8e-0939.44Show/hide
Query:  NSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSS
        +   I + P VE++D  T  A+  CAVC E F     G+++PC H++H +CI  WLS+ + CP+CR  + S
Subjt:  NSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSS

Q9SPL2 E3 ubiquitin-protein ligase CIP82.4e-0946Show/hide
Query:  LCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSGD
        +CAVC +G    E GK++PCGH YH +CI  WL   + CP+CR  + + D
Subjt:  LCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSGD

Q9VHI7 E3 ubiquitin-protein ligase Iruka1.8e-0931.52Show/hide
Query:  LDTVLTGADDYYNSETITAPPSV---EVADLPTV--TADDL-----CAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVS
        LDT++T      N    + PP +    + ++P V   A+++     C++C + F+ DE  +++PC H+YH+NCI  WL++   CP+CR+ ++
Subjt:  LDTVLTGADDYYNSETITAPPSV---EVADLPTV--TADDL-----CAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVS

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein4.5e-1138.1Show/hide
Query:  DYYNSETITAPP----SVEVADLPTVTADDL-----CAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSG
        D   S  I  PP    ++E      +T +DL     CA+C E F   E GK++ C H+YH +CI SWL++ + CP+CR  V+ G
Subjt:  DYYNSETITAPP----SVEVADLPTVTADDL-----CAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSG

AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein1.3e-1039.44Show/hide
Query:  NSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSS
        +   I + P VE++D  T  A+  CAVC E F     G+++PC H++H +CI  WLS+ + CP+CR  + S
Subjt:  NSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSS

AT3G56580.1 RING/U-box superfamily protein1.7e-1031.65Show/hide
Query:  TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSGDKTEAPKTVQ
        +I A P++++      ++D  C VC + F      KQ+PC H+YH +CI  WL   + CP+CR+ + S   + + ++ Q
Subjt:  TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSGDKTEAPKTVQ

AT3G56580.2 RING/U-box superfamily protein1.7e-1031.65Show/hide
Query:  TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSGDKTEAPKTVQ
        +I A P++++      ++D  C VC + F      KQ+PC H+YH +CI  WL   + CP+CR+ + S   + + ++ Q
Subjt:  TITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSGDKTEAPKTVQ

AT3G60080.1 RING/U-box superfamily protein1.3e-1038.89Show/hide
Query:  SETITAPPSVEVADLPTVTADD-------LCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCR
        S  I + P+++++     + DD       LCAVC E F   E  +++PC H+YH +CI  WLS  + CPLCR
Subjt:  SETITAPPSVEVADLPTVTADD-------LCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCTCGCCTGAAACTACAAGATCTGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGAGCCGACGACTA
CTACAACAGCGAGACCATCACAGCGCCGCCGTCGGTCGAGGTCGCCGATTTGCCGACAGTGACCGCCGACGACCTATGTGCGGTTTGTATGGAGGGTTTCCGGCCGGACG
AAGGCGGTAAACAGATCCCCTGCGGCCATGTGTACCATCAAAATTGTATATCCTCATGGCTCTCCGTCGGCGACTGCTGCCCTCTCTGCCGCCGCCACGTCTCCTCTGGC
GACAAAACGGAGGCGCCTAAGACCGTACAAGTTTAG
mRNA sequenceShow/hide mRNA sequence
CGAATTTCTATCTGTCTCTTTTGCTTATTTACTTCTCCTTCTCCATGGCCGCCGTCTCGCCTGAAACTACAAGATCTGCTTTTGCAGCGAGCTACATCATGGACCTTGAA
TCGATGTTCGATCTCGACACGGTCCTCACCGGAGCCGACGACTACTACAACAGCGAGACCATCACAGCGCCGCCGTCGGTCGAGGTCGCCGATTTGCCGACAGTGACCGC
CGACGACCTATGTGCGGTTTGTATGGAGGGTTTCCGGCCGGACGAAGGCGGTAAACAGATCCCCTGCGGCCATGTGTACCATCAAAATTGTATATCCTCATGGCTCTCCG
TCGGCGACTGCTGCCCTCTCTGCCGCCGCCACGTCTCCTCTGGCGACAAAACGGAGGCGCCTAAGACCGTACAAGTTTAG
Protein sequenceShow/hide protein sequence
MAAVSPETTRSAFAASYIMDLESMFDLDTVLTGADDYYNSETITAPPSVEVADLPTVTADDLCAVCMEGFRPDEGGKQIPCGHVYHQNCISSWLSVGDCCPLCRRHVSSG
DKTEAPKTVQV