; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0011122 (gene) of Snake gourd v1 genome

Gene IDTan0011122
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG07:40330530..40333750
RNA-Seq ExpressionTan0011122
SyntenyTan0011122
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]9.5e-0554.55Show/hide
Query:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT
        A+VEIELPV D LP              ++R ++VCWLHVVFR K AGG GGGVT
Subjt:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]7.8e-0756.9Show/hide
Query:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVTVHI
        A+VEIELPVPD LP              ++RG++VCWLH VFRAK AGG GGGVT +I
Subjt:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVTVHI

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.8e-0454.72Show/hide
Query:  VEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT
        VEIEL VPD LP              ++RG++VCWLHVVFRAK  GG GG VT
Subjt:  VEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]9.5e-0550.91Show/hide
Query:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT
        A+ EIELPVPD L               ++RG++VCWLH +FRAK+ GG GGGVT
Subjt:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]5.6e-0554.55Show/hide
Query:  LVEIELPVPDILPYQQV-----------LLRGNNVCWLHVVFRAKLAGGSGGGVT
        +VEIELPVPD LP  +V           ++R +NVCWL  VFRAK  GG GGGVT
Subjt:  LVEIELPVPDILPYQQV-----------LLRGNNVCWLHVVFRAKLAGGSGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7VGQ5 Uncharacterized protein1.3e-0454.72Show/hide
Query:  VEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT
        VEIEL VPD LP              ++RG++VCWLHVVFRAK  GG GG VT
Subjt:  VEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.8e-0756.9Show/hide
Query:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVTVHI
        A+VEIELPVPD LP              ++RG++VCWLH VFRAK AGG GGGVT +I
Subjt:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVTVHI

A0A5D3BNX1 Zf-CCHC domain-containing protein4.6e-0550.91Show/hide
Query:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT
        A+ EIELPVPD L               ++RG++VCWLH +FRAK+ GG GGGVT
Subjt:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT

A0A5D3BSA6 Retrotrans_gag domain-containing protein4.6e-0554.55Show/hide
Query:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT
        A+VEIELPV D LP              ++R ++VCWLHVVFR K AGG GGGVT
Subjt:  ALVEIELPVPDILPYQQV----------LLRGNNVCWLHVVFRAKLAGGSGGGVT

A0A5D3C4P7 Retrotrans_gag domain-containing protein2.7e-0554.55Show/hide
Query:  LVEIELPVPDILPYQQV-----------LLRGNNVCWLHVVFRAKLAGGSGGGVT
        +VEIELPVPD LP  +V           ++R +NVCWL  VFRAK  GG GGGVT
Subjt:  LVEIELPVPDILPYQQV-----------LLRGNNVCWLHVVFRAKLAGGSGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTGTTTGTTTGACAGGCCAAGAGAAGATAGGTCGAGTGGTTGACTCATGGATATTGGTTATATCGATGGACACAACTTGTCCTACAGTGATGAGAGTGCAGCT
ACGAGCTTTAGTAGAGATCGAGCTCCCGGTACCTGACATCCTACCATATCAGCAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGTCGTCTTCCGAGCTAAGT
TAGCAGGTGGTTCGGGAGGGGGTGTGACAGTTCATATACTGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTGTTTGTTTGACAGGCCAAGAGAAGATAGGTCGAGTGGTTGACTCATGGATATTGGTTATATCGATGGACACAACTTGTCCTACAGTGATGAGAGTGCAGCT
ACGAGCTTTAGTAGAGATCGAGCTCCCGGTACCTGACATCCTACCATATCAGCAGGTATTGTTAAGAGGTAACAATGTCTGTTGGCTTCATGTCGTCTTCCGAGCTAAGT
TAGCAGGTGGTTCGGGAGGGGGTGTGACAGTTCATATACTGATTTAG
Protein sequenceShow/hide protein sequence
MDFVCLTGQEKIGRVVDSWILVISMDTTCPTVMRVQLRALVEIELPVPDILPYQQVLLRGNNVCWLHVVFRAKLAGGSGGGVTVHILI