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Tan0011140 (gene) of Snake gourd v1 genome

Gene IDTan0011140
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPre-mRNA-splicing factor SF2
Genome locationLG07:9013129..9013428
RNA-Seq ExpressionTan0011140
SyntenyTan0011140
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042513.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]2.8e-3793.83Show/hide
Query:  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

KCW89084.1 hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis]5.1e-1549.49Show/hide
Query:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF
        M SAWT+MS A+I RD+EREWEN  GV+GI   N    SL E+L   +        K  F   I LEHLGANEQW+  +     IALLVCFIV   + F
Subjt:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF

KGN49818.1 hypothetical protein Csa_000599 [Cucumis sativus]2.0e-4388.89Show/hide
Query:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF
        M SA T+MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV+ S LF
Subjt:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF

PON83659.1 hypothetical protein TorRG33x02_204650, partial [Trema orientale]1.7e-1856Show/hide
Query:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF
        MASAWT+MSIA+IHRDIER+WE  CGV+G+IFL  +  + S+++ T AKILERMRR K     ++    L       CGARLTSRIALLVCF+V   + F
Subjt:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF

TYK05915.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]2.8e-3793.83Show/hide
Query:  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

TrEMBL top hitse value%identityAlignment
A0A0A0KJQ0 Uncharacterized protein9.7e-4488.89Show/hide
Query:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF
        M SA T+MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV+ S LF
Subjt:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF

A0A2P5DF99 Uncharacterized protein (Fragment)2.5e-1552Show/hide
Query:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF
        M SAWT+MSIA+IHRDIER+WE  CGV+G+IFL  +  + S+++ T AKILERMRR K     ++    L        GA LT RIALLVCF+V   + F
Subjt:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF

A0A2P5EDP3 Uncharacterized protein (Fragment)8.2e-1956Show/hide
Query:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF
        MASAWT+MSIA+IHRDIER+WE  CGV+G+IFL  +  + S+++ T AKILERMRR K     ++    L       CGARLTSRIALLVCF+V   + F
Subjt:  MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF

A0A5A7TGZ1 Pre-mRNA-splicing factor SF21.4e-3793.83Show/hide
Query:  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

A0A5D3C3G3 Pre-mRNA-splicing factor SF21.4e-3793.83Show/hide
Query:  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGCTTGGACACATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTGTGGGTATTATTTTTTTAAATGGAGATAC
TTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGC
AATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGTCTTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCGCTTGGACACATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTGTGGGTATTATTTTTTTAAATGGAGATAC
TTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGC
AATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGTCTTATTTTGA
Protein sequenceShow/hide protein sequence
MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF