CuGenDBv2

Gene ID	Tan0011156
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase II subunit RPB1-like
Genome location	LG01:28287448..28288762
RNA-Seq Expression	Tan0011156
Synteny	Tan0011156
Gene Ontology terms	NA
InterPro domains	IPR011057 - Mss4-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146165.1 uncharacterized protein At4g08330, chloroplastic [Cucumis sativus]

8.8e-53

79.34

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIYSCTECG NLNLNS+HLFPPDFYFEAGNKGTLSFS IDSTKFR EKEDKLRPFFET+NYWGIQRKRTK+ CN+CG LVGYVYDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQWTVEREGIK
        FGPSQ+  R  ++  + + ++
Subjt:  FGPSQLKGRVAQWTVEREGIK

XP_022965337.1 uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima]

1.8e-53

88.5

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIYSC ECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQRKRTKI CN+C  LVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQW
        FGPSQ+  R  ++
Subjt:  FGPSQLKGRVAQW

XP_023551931.1 uncharacterized protein LOC111809759 isoform X2 [Cucurbita pepo subsp. pepo]

2.0e-52

86.73

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIY C ECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQRKRTKI CN+C  LVGYVYDDGPPLT+SPGQYH
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQW
        FGPSQ+  R  ++
Subjt:  FGPSQLKGRVAQW

XP_028774540.1 uncharacterized protein LOC114731516 [Prosopis alba]

1.4e-53

76.86

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MAS+YSCTECG+NLNLNS+HLFPPDFYFEAGNKGT SF+++D+TKFRFEKEDK+RPFFETVNYWGIQRKRTKI CN+CGCLVGYVYDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQWTVEREGIK
         GPSQ+  R  ++  + + ++
Subjt:  FGPSQLKGRVAQWTVEREGIK

XP_038903300.1 uncharacterized protein LOC120089928 [Benincasa hispida]

6.8e-53

80.17

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIYSC ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFR EKEDKLRPFFETVNYWGIQRKRTK+ CN+CG LVGY+YDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQWTVEREGIK
        FGPSQ+  R  ++  + + ++
Subjt:  FGPSQLKGRVAQWTVEREGIK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4W0 Uncharacterized protein

4.3e-53

79.34

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIYSCTECG NLNLNS+HLFPPDFYFEAGNKGTLSFS IDSTKFR EKEDKLRPFFET+NYWGIQRKRTK+ CN+CG LVGYVYDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQWTVEREGIK
        FGPSQ+  R  ++  + + ++
Subjt:  FGPSQLKGRVAQWTVEREGIK

A0A1S3BJW2 uncharacterized protein LOC103490667

3.6e-52

77.69

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIYSC+ECG NLNLNSSHLFPPDFYFEAGNKGTLSFS IDSTKFR EKEDKLRPFFET+NYWGIQRKRTK+ C +CG LVGY+YDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQWTVEREGIK
        FGPSQ+  R  ++  + + ++
Subjt:  FGPSQLKGRVAQWTVEREGIK

A0A6J1E6R2 uncharacterized protein LOC111431209

1.2e-52

86.73

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIY C ECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQR RTKI CN+C  LVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQW
        FGPSQ+  R  ++
Subjt:  FGPSQLKGRVAQW

A0A6J1HK24 uncharacterized protein LOC111465232 isoform X2

8.6e-54

88.5

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIYSC ECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQRKRTKI CN+C  LVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQW
        FGPSQ+  R  ++
Subjt:  FGPSQLKGRVAQW

A0A7J7I8I0 Uncharacterized protein

1.4e-51

69.47

Show/hide

Query:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH
        MASIYSCTECGAN NL+++HLFPPDFYFEAGNKGT+SF+LID+TKF+FEKEDK+RPFFET+NYWGIQRKRTKI C++C  LVGY+YDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQLKGRVAQWTVEREGIKRSVTCLFPHF
         GPSQ+  R  ++  + + ++    CL   F
Subjt:  FGPSQLKGRVAQWTVEREGIKRSVTCLFPHF

SwissProt top hits

e value

%identity

Alignment

Q9STN5 Uncharacterized protein At4g08330, chloroplastic

2.4e-05

32.22

Show/hide

Query:  YSCTECGANLNLNSSHLFPPDF---YFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPP
        YSC  CG  LNL+S++         Y ++   G +SF  ID  +F    E +  P F   + WG+ R RTK+ C  C   +G    +  P
Subjt:  YSCTECGANLNLNSSHLFPPDF---YFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPP

Arabidopsis top hits

e value

%identity

Alignment

AT2G17705.1 unknown protein

1.7e-46

63.93

Show/hide

Query:  ASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYHF
        ++IY+C ECG++LNLN + LFPPDFYFEAGNKGTLSF+ +D+ KFRFEKEDK+ PFFET+NYWGIQRKRTKI C +C  L+GY+YDDGPPLT   GQY F
Subjt:  ASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYHF

Query:  GPSQLKGRVAQWTVEREGIKRS
        GPSQ+  R  ++  + + ++ S
Subjt:  GPSQLKGRVAQWTVEREGIKRS

AT4G08330.1 unknown protein

1.7e-06

32.22

Show/hide

Query:  YSCTECGANLNLNSSHLFPPDF---YFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPP
        YSC  CG  LNL+S++         Y ++   G +SF  ID  +F    E +  P F   + WG+ R RTK+ C  C   +G    +  P
Subjt:  YSCTECGANLNLNSSHLFPPDF---YFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCCATATACTCCTGTACAGAATGTGGAGCAAATCTGAATCTCAATTCCAGTCATCTCTTCCCGCCGGATTTCTACTTCGAGGCCGGAAACAAGGGCACCCTTTC
GTTTTCGTTGATCGACTCCACCAAGTTCCGGTTCGAGAAGGAGGACAAGCTCCGACCATTCTTCGAGACCGTTAACTATTGGGGAATCCAGCGGAAACGCACCAAGATCA
ACTGCAATGCCTGTGGATGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTTACCGATAGTCCAGGTCAGTACCACTTCGGACCTAGCCAGTTAAAGGGGAGGGTT
GCTCAATGGACAGTGGAAAGGGAAGGCATTAAAAGGTCTGTCACTTGTCTTTTTCCTCATTTTATCGGCCCTTTCAATCCTTTAACATACACATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASIYSCTECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKINCNACGCLVGYVYDDGPPLTDSPGQYHFGPSQLKGRV
AQWTVEREGIKRSVTCLFPHFIGPFNPLTYT

Tan0011156 (gene) of Snake gourd v1 genome