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Tan0011162 (gene) of Snake gourd v1 genome

Gene IDTan0011162
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionF-box/LRR-repeat protein
Genome locationLG07:68225874..68226606
RNA-Seq ExpressionTan0011162
SyntenyTan0011162
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042782.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]1.5e-2372.94Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTPLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN
        MASQN   PSL  FLF ILLTTTPL AARRL  +A Q +NDSL PPTT+TFSF QPPAAV++ IT +N+ VSLRKVPAGPNPLHN
Subjt:  MASQNPISPSLLFFLFTILLTTTPLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN

KAG6579492.1 hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sororia]8.6e-1972.09Show/hide
Query:  MASQNPISPSLLFFLFTILLTTT-PLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN
        MASQNPI+ SL  FLF ILLTTT PLSA RRLSTA Q  +NDSL PPTTS FSF QPP  VE     QN+ VS RKVPAGPNPLHN
Subjt:  MASQNPISPSLLFFLFTILLTTT-PLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN

KAG6606114.1 Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia]3.2e-1365.82Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTPLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAG
        MAS NP S  LL FL TILLTT  LSAA      AQQ  NDSL PPT+STFS  + P AVE+VI PQN  VSLRKVPAG
Subjt:  MASQNPISPSLLFFLFTILLTTTPLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAG

KGN50125.1 hypothetical protein Csa_000058 [Cucumis sativus]6.3e-2275.28Show/hide
Query:  MASQNPISPSLLF-FLFTILL-TTTPLSAARRLSTAAQQLQND--SLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN
        MASQN I P+ LF FLF ILL TTTPL AARR  T+A Q +ND  SLHPPTTSTFSFTQPPAAVE+ IT +N+ VSLRKVPAGPNPLHN
Subjt:  MASQNPISPSLLF-FLFTILL-TTTPLSAARRLSTAAQQLQND--SLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN

TrEMBL top hitse value%identityAlignment
A0A0A0KKA9 Uncharacterized protein3.1e-2275.28Show/hide
Query:  MASQNPISPSLLF-FLFTILL-TTTPLSAARRLSTAAQQLQND--SLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN
        MASQN I P+ LF FLF ILL TTTPL AARR  T+A Q +ND  SLHPPTTSTFSFTQPPAAVE+ IT +N+ VSLRKVPAGPNPLHN
Subjt:  MASQNPISPSLLF-FLFTILL-TTTPLSAARRLSTAAQQLQND--SLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN

A0A5A7THA6 F-box/LRR-repeat protein7.3e-2472.94Show/hide
Query:  MASQNPISPSLLFFLFTILLTTTPLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN
        MASQN   PSL  FLF ILLTTTPL AARRL  +A Q +NDSL PPTT+TFSF QPPAAV++ IT +N+ VSLRKVPAGPNPLHN
Subjt:  MASQNPISPSLLFFLFTILLTTTPLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTCAAAACCCCATTTCCCCTTCTCTCCTTTTCTTCCTCTTCACAATTCTCCTCACCACCACCCCTCTCTCCGCCGCCCGCCGCCTCTCCACCGCCGCACAACA
ACTGCAAAATGATTCTCTCCACCCACCCACCACCTCAACATTTTCATTCACACAGCCGCCGGCCGCCGTGGAGGAAGTCATCACACCCCAAAACTTCGTCGTTTCACTCC
GCAAAGTCCCCGCCGGTCCGAACCCGCTTCATAACTAA
mRNA sequenceShow/hide mRNA sequence
CTTCTTCCAATTCTCTCTCTCTCTCTCCATTGAAACAATGGCTTCTCAAAACCCCATTTCCCCTTCTCTCCTTTTCTTCCTCTTCACAATTCTCCTCACCACCACCCCTC
TCTCCGCCGCCCGCCGCCTCTCCACCGCCGCACAACAACTGCAAAATGATTCTCTCCACCCACCCACCACCTCAACATTTTCATTCACACAGCCGCCGGCCGCCGTGGAG
GAAGTCATCACACCCCAAAACTTCGTCGTTTCACTCCGCAAAGTCCCCGCCGGTCCGAACCCGCTTCATAACTAAACCGATCAGCATAACATCGGATCGAGGGAAAACAA
ATTATTCAATGTGACCACCACCACTACGTAACAATTCTTCCATACAAGTTCGAAGTACAATTTTCGAATACCCTTACCACATCAGCGAGTATAAAATCGTCAGCCACAAT
GTTCCAACTTCTCAAATAGTTTCTCCACCAACAAACTTTTTGAAGTCTCTCATAGGGGTAATTTTTCTTTTTCCTTTTCTTTATACAGAAAAATTGTGTAGAGCAATAAT
AGTTATATGTATGTGATGAAGAGATGAAAAACGACAACGTTTAGTTTTTTTTTTTTTTTTAATAGTATTGGAAATTTGATTGATTTTTGTTAAGAAATTTATAGAAAAAT
ATAAGATCGAGAATTCCGCCGTAGTTGTGAATGTTCTGCGGACTACAAGGGATGGTGGGTTCAAGTTCCACAG
Protein sequenceShow/hide protein sequence
MASQNPISPSLLFFLFTILLTTTPLSAARRLSTAAQQLQNDSLHPPTTSTFSFTQPPAAVEEVITPQNFVVSLRKVPAGPNPLHN