; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0011165 (gene) of Snake gourd v1 genome

Gene IDTan0011165
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG02:7788665..7790650
RNA-Seq ExpressionTan0011165
SyntenyTan0011165
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]7.4e-3392.21Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSG
        MASMSSHGSGTWT +QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESG+VP+PYR SG
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSG

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]2.6e-3392.31Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGG
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESG+VP+PYR SGG
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGG

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]2.6e-3392.31Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGG
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESG+VP+PYR SGG
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGG

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]7.4e-3392.21Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSG
        MASMSSHGSGTWT +QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESG+VP+PYR SG
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSG

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]2.8e-3290Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNS-GGN
        MASMSSHGSG+WTA+QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HY LLVEDVKFIESG+VP+PYR+S GGN
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNS-GGN

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein1.2e-3392.31Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGG
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESG+VP+PYR SGG
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGG

A0A1S3BFW6 protein RADIALIS-like 13.6e-3392.21Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSG
        MASMSSHGSGTWT +QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESG+VP+PYR SG
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSG

A0A5A7SYK4 Protein RADIALIS-like 13.6e-3392.21Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSG
        MASMSSHGSGTWT +QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESG+VP+PYR SG
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSG

A0A6J1C385 protein RADIALIS-like 12.3e-3289.74Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGG
        MASMSSHGS  WTA+QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESG+V +PYR SGG
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGG

A0A6J1F548 protein RADIALIS-like 16.8e-3286.08Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGGN
        MASMSSHGS +WTA+QNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY+LLVEDVKFIESGRVPYPYRNSG +
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGGN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.3e-2774.36Show/hide
Query:  ASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGG
        +SMSS  SG+WTA+QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHYELLV+D+  IE+G VP+P YR SGG
Subjt:  ASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGG

Q1A173 Protein RADIALIS-like 62.1e-2270.83Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED+  IE+GRVP P
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP

Q58FS3 Transcription factor RADIALIS9.1e-2670.13Show/hide
Query:  SSHGSG-TWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGGN
        S+ GSG  W+A++NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HYE+LVED+K+IESG+VP+P YR +GGN
Subjt:  SSHGSG-TWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGGN

Q6NNN0 Protein RADIALIS-like 37.7e-2567.5Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGGN
        MAS S   S +WT ++NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHYELL+ DV  IESGR P+P YR++G N
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGGN

Q9SIJ5 Protein RADIALIS-like 23.1e-2670.51Show/hide
Query:  SMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGGN
        SMSS+GSG+WT +QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y+LLV D++ IE+G VP+P Y+ + GN
Subjt:  SMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGGN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 55.7e-2368.06Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP
        MAS S   S +WT++QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY++LVED+  IE   VP P
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP

AT1G75250.1 RAD-like 61.5e-2370.83Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED+  IE+GRVP P
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP

AT1G75250.2 RAD-like 61.5e-2370.83Show/hide
Query:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY++LVED+  IE+GRVP P
Subjt:  MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP

AT2G21650.1 Homeodomain-like superfamily protein2.2e-2770.51Show/hide
Query:  SMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGGN
        SMSS+GSG+WT +QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y+LLV D++ IE+G VP+P Y+ + GN
Subjt:  SMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGGN

AT4G39250.1 RAD-like 19.0e-2974.36Show/hide
Query:  ASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGG
        +SMSS  SG+WTA+QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHYELLV+D+  IE+G VP+P YR SGG
Subjt:  ASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYP-YRNSGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTTCTCATGGCTCTGGTACTTGGACTGCACAGCAAAACAAGGCCTTTGAGAAGGCTTTGGCAGTGTATGACCAAGACACACCTGACCGATGGTTGAA
TGTTGCAAAAGCTGTTGGTGGAAAAACTGCTGAGGAGGTCAAAAGGCACTATGAGCTTCTTGTGGAGGATGTCAAGTTTATTGAGTCGGGTCGAGTTCCCTACCCCTATC
GAAACTCTGGCGGTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTTCTCATGGCTCTGGTACTTGGACTGCACAGCAAAACAAGGCCTTTGAGAAGGCTTTGGCAGTGTATGACCAAGACACACCTGACCGATGGTTGAA
TGTTGCAAAAGCTGTTGGTGGAAAAACTGCTGAGGAGGTCAAAAGGCACTATGAGCTTCTTGTGGAGGATGTCAAGTTTATTGAGTCGGGTCGAGTTCCCTACCCCTATC
GAAACTCTGGCGGTAATTAA
Protein sequenceShow/hide protein sequence
MASMSSHGSGTWTAQQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYELLVEDVKFIESGRVPYPYRNSGGN