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Tan0011178 (gene) of Snake gourd v1 genome

Gene IDTan0011178
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCytochrome c oxidase subunit VIb
Genome locationLG07:71009219..71012073
RNA-Seq ExpressionTan0011178
SyntenyTan0011178
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465918.1 PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo]4.0e-2756.16Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNKGK-------------LRFYFLN-------
        MSA+Q+DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPP SS+SV S QTN  H   RR G EDKD   K             LRF F N       
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNKGK-------------LRFYFLN-------

Query:  ------LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI
               C+QKKGEHAPEC KFA     +     +   N+QRELG+
Subjt:  ------LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI

XP_022973259.1 cytochrome c oxidase subunit 6b-3-like [Cucurbita maxima]1.2e-2354.55Show/hide
Query:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNK-----------GKLRFYFLN-------------LCLQKKGE
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSSS SS QTNL  NG+ R GG+D+  K             +RF F N              CLQKKGE
Subjt:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNK-----------GKLRFYFLN-------------LCLQKKGE

Query:  HAPECDKFAKSSIIV-----LRNGNQQRELGI
        H PECDKFAK    +     +   N+QRELGI
Subjt:  HAPECDKFAKSSIIV-----LRNGNQQRELGI

XP_031737980.1 putative cytochrome c oxidase subunit 6b-like isoform X1 [Cucumis sativus]2.3e-2763.41Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHN-GDRRGGGEDKDNK-----------GKLRFYFLN--------
        MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPP SSSSV S QTNL  N  DRR G ED+DNK             +RF F N        
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHN-GDRRGGGEDKDNK-----------GKLRFYFLN--------

Query:  -----LCLQKKGEHAPECDKFAK
              C+QKKGEHAPEC KFAK
Subjt:  -----LCLQKKGEHAPECDKFAK

XP_031737981.1 cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus]7.2e-2957.93Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHN-GDRRGGGEDKDNK-----------GKLRFYFLN--------
        MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPP SSSSV S QTNL  N  DRR G ED+DNK             +RF F N        
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHN-GDRRGGGEDKDNK-----------GKLRFYFLN--------

Query:  -----LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI
              C+QKKGEHAPEC KFAK    +     +   N+QRELG+
Subjt:  -----LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI

XP_038886888.1 putative cytochrome c oxidase subunit 6b-like [Benincasa hispida]8.6e-3060.56Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHN-GDRRGGGEDKDNKGK--------LRFYFLN-----------
        MSAAQVDPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPP SSSSV S QTNL  N  DRR GGED DNK +        LRF F N           
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHN-GDRRGGGEDKDNKGK--------LRFYFLN-----------

Query:  --LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI
           C+QK+GEHAPEC KFAK    +     +   N+QRELG+
Subjt:  --LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI

TrEMBL top hitse value%identityAlignment
A0A0A0LEH8 Uncharacterized protein3.5e-2957.93Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHN-GDRRGGGEDKDNK-----------GKLRFYFLN--------
        MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPP SSSSV S QTNL  N  DRR G ED+DNK             +RF F N        
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHN-GDRRGGGEDKDNK-----------GKLRFYFLN--------

Query:  -----LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI
              C+QKKGEHAPEC KFAK    +     +   N+QRELG+
Subjt:  -----LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI

A0A1S3CQ05 putative cytochrome c oxidase subunit 6b-like1.9e-2756.16Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNKGK-------------LRFYFLN-------
        MSA+Q+DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPP SS+SV S QTN  H   RR G EDKD   K             LRF F N       
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNKGK-------------LRFYFLN-------

Query:  ------LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI
               C+QKKGEHAPEC KFA     +     +   N+QRELG+
Subjt:  ------LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI

A0A5D3E4S8 Putative cytochrome c oxidase subunit 6b-like1.9e-2756.16Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNKGK-------------LRFYFLN-------
        MSA+Q+DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPP SS+SV S QTN  H   RR G EDKD   K             LRF F N       
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNKGK-------------LRFYFLN-------

Query:  ------LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI
               C+QKKGEHAPEC KFA     +     +   N+QRELG+
Subjt:  ------LCLQKKGEHAPECDKFAKSSIIV-----LRNGNQQRELGI

A0A6J1F3D0 cytochrome c oxidase subunit 6b-3-like7.6e-2456.06Show/hide
Query:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNK-----------GKLRFYFLN-------------LCLQKKGE
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS+ SS QTNL  N DRR GG+DKD+K             +RF F N               LQKKGE
Subjt:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNK-----------GKLRFYFLN-------------LCLQKKGE

Query:  HAPECDKFAK-----SSIIVLRNGNQQRELGI
        HAPECDKFAK       +  +   N+QRELGI
Subjt:  HAPECDKFAK-----SSIIVLRNGNQQRELGI

A0A6J1IE20 cytochrome c oxidase subunit 6b-3-like5.8e-2454.55Show/hide
Query:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNK-----------GKLRFYFLN-------------LCLQKKGE
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSSS SS QTNL  NG+ R GG+D+  K             +RF F N              CLQKKGE
Subjt:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNK-----------GKLRFYFLN-------------LCLQKKGE

Query:  HAPECDKFAKSSIIV-----LRNGNQQRELGI
        H PECDKFAK    +     +   N+QRELGI
Subjt:  HAPECDKFAKSSIIV-----LRNGNQQRELGI

SwissProt top hitse value%identityAlignment
Q9LPJ2 Putative cytochrome c oxidase subunit 6b-like1.1e-1142.71Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNG--DRRGGGEDKDNKGKLRFYFLNLCLQKKGEHAPECD
        MS+AQ+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS PP   ++       +  + +   + R    ++      RF   + C++K G  A +C+
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNG--DRRGGGEDKDNKGKLRFYFLNLCLQKKGEHAPECD

Arabidopsis top hitse value%identityAlignment
AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein7.8e-1342.71Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNG--DRRGGGEDKDNKGKLRFYFLNLCLQKKGEHAPECD
        MS+AQ+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS PP   ++       +  + +   + R    ++      RF   + C++K G  A +C+
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNG--DRRGGGEDKDNKGKLRFYFLNLCLQKKGEHAPECD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGGCTCAGGTTGATCCTCACGACAAGATGAGGTCCAGAGACGTTAGCAAGGTGGCTCGGGGCGAGCAAGCCCCGAGGCCCGCTCACGAATACGGCACCGTTTC
AAAGCCTCCGCCTCCTTCTTCCAGCTCCTCCGTTTCCTCCACTCAGACCAACCTCCAGCATAACGGCGATCGCCGCGGTGGTGGTGAAGATAAAGACAATAAGGGTAAGT
TACGATTTTATTTTTTAAATTTGTGCTTGCAGAAGAAGGGGGAACATGCGCCTGAATGCGATAAATTTGCCAAGTCAAGTATTATCGTATTGAGAAATGGGAACCAGCAA
AGGGAGCTTGGTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGGCTCAGGTTGATCCTCACGACAAGATGAGGTCCAGAGACGTTAGCAAGGTGGCTCGGGGCGAGCAAGCCCCGAGGCCCGCTCACGAATACGGCACCGTTTC
AAAGCCTCCGCCTCCTTCTTCCAGCTCCTCCGTTTCCTCCACTCAGACCAACCTCCAGCATAACGGCGATCGCCGCGGTGGTGGTGAAGATAAAGACAATAAGGGTAAGT
TACGATTTTATTTTTTAAATTTGTGCTTGCAGAAGAAGGGGGAACATGCGCCTGAATGCGATAAATTTGCCAAGTCAAGTATTATCGTATTGAGAAATGGGAACCAGCAA
AGGGAGCTTGGTATATAA
Protein sequenceShow/hide protein sequence
MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSSSSVSSTQTNLQHNGDRRGGGEDKDNKGKLRFYFLNLCLQKKGEHAPECDKFAKSSIIVLRNGNQQ
RELGI