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Tan0011258 (gene) of Snake gourd v1 genome

Gene IDTan0011258
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG07:45337850..45338104
RNA-Seq ExpressionTan0011258
SyntenyTan0011258
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019172756.1 PREDICTED: uncharacterized protein LOC109168170 [Ipomoea nil]5.0e-1968.24Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEEK
        MSL++IVK LANNT QFQQETR  +Q LGNQ++QLATSVSKLEAQ SGKLPSQ EVN +ENV+AI  RSGK++ P   +  +EEK
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEEK

XP_031112037.1 uncharacterized protein LOC116016008 [Ipomoea triloba]1.3e-1970.59Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEEK
        MSL++IVK LANNT QF QETR G+Q LGNQI+QLATSVSKLEAQ S KLPSQ EVN +ENVSAI  RSGK++ P   +P +EEK
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEEK

XP_031127553.1 uncharacterized protein LOC116029647 [Ipomoea triloba]2.9e-1970.59Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEEK
        MSL++IVK LANNT QFQQETR  +Q LGNQI+QLATSVSKLEAQ S KLPSQ EVN +ENVSAI  RSGK++ P   +P +EEK
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEEK

XP_031131791.1 uncharacterized protein LOC116033171 [Ipomoea triloba]2.9e-1970.59Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEEK
        MSL++IVK LANNT QFQQETR G Q LGNQI+QLAT VSKLEAQ S KLPSQ EVN +ENVSAI  RSGK++ P   +P +EEK
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEEK

XP_031131881.1 uncharacterized protein LOC116033267 [Ipomoea triloba]5.0e-1970.24Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEE
        MSL++IVK LANNT QFQQET  G+Q LGNQI+QLATSVSKLEAQ S KLPSQ EVN +ENVSAI  RSGK++ P   +P +EE
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI-PSGVIPPKEE

TrEMBL top hitse value%identityAlignment
A0A0K9QKB3 Retrotrans_gag domain-containing protein (Fragment)8.6e-1764.63Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEIPSGVIPPKE
        MSLE+IVKT+ANNT+QFQQE R G++NL NQ++QLA +V KL+AQNS KLPSQ E N +ENVS I  RSGKE+ +   P KE
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEIPSGVIPPKE

A0A1U7YY93 uncharacterized protein LOC1045883495.5e-1667.12Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI
        MSLEDIVK+LA  TLQFQ ETR  +Q L NQ+ Q+AT++S+LEAQ+SGKLPSQ  V  +ENVSAI+ RSGKE+
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI

A0A1U8BPS3 uncharacterized protein LOC1046132155.5e-1662.5Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI--PSGVIP--PKEEK
        MSL+DIVK+LA NTLQFQQETR  +Q L NQ+ Q+AT++S LEAQ+ GKLPSQ  VN +ENVSAI+ RSGKE+  P+   P   K+EK
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI--PSGVIP--PKEEK

A0A6J1DRS5 uncharacterized protein LOC1110232483.1e-1967.05Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTR----ENVSAIMPRSGKEIPSGVIPPKEEK
        MSLE+IVK LAN+TLQFQQETRVGMQNLGNQITQLATS+S+LEAQ+SG LPSQ EVN +    E +SA+M R+ ++IP   IP K+ +
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTR----ENVSAIMPRSGKEIPSGVIPPKEEK

A0A7J0FIA0 Uncharacterized protein8.6e-1769.86Show/hide
Query:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI
        MSLEDIVK+LA NT+QFQQET+  +Q+L NQ+ Q+AT++S+LEAQ SGKLPSQ  VN REN SAI+ RSGKEI
Subjt:  MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGGAAGATATTGTTAAGACCCTAGCTAACAATACTCTTCAATTTCAACAGGAGACAAGAGTAGGCATGCAAAATTTAGGTAACCAAATTACTCAATTGGCTAC
GTCAGTCAGTAAGTTGGAAGCCCAAAATTCTGGAAAGTTGCCTTCACAACAAGAGGTGAATACAAGGGAGAACGTTAGTGCAATAATGCCTAGAAGCGGGAAAGAAATTC
CCTCTGGAGTGATTCCACCTAAGGAGGAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTGGAAGATATTGTTAAGACCCTAGCTAACAATACTCTTCAATTTCAACAGGAGACAAGAGTAGGCATGCAAAATTTAGGTAACCAAATTACTCAATTGGCTAC
GTCAGTCAGTAAGTTGGAAGCCCAAAATTCTGGAAAGTTGCCTTCACAACAAGAGGTGAATACAAGGGAGAACGTTAGTGCAATAATGCCTAGAAGCGGGAAAGAAATTC
CCTCTGGAGTGATTCCACCTAAGGAGGAAAAATAA
Protein sequenceShow/hide protein sequence
MSLEDIVKTLANNTLQFQQETRVGMQNLGNQITQLATSVSKLEAQNSGKLPSQQEVNTRENVSAIMPRSGKEIPSGVIPPKEEK