CuGenDBv2

Gene ID	Tan0011282
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG09:55969816..55970406
RNA-Seq Expression	Tan0011282
Synteny	Tan0011282
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-70

67.86

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-70

67.86

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-70

67.86

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-70

68.37

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+  WK+ +N +L++DDLRFVL EECPQ+ A NA Q+V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.8e-70

67.86

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.8e-70

67.86

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

A0A5A7TU93 Gag/pol protein

1.8e-70

67.86

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

A0A5A7TWB9 Gag/pol protein

1.8e-70

67.86

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

A0A5A7V6N0 Gag/pol protein

8.2e-71

68.37

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+  WK+ +N +L++DDLRFVL EECPQ+ A NA Q+V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

A0A5D3CPJ6 Gag/pol protein

1.8e-70

67.86

Show/hide

Query:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE
        M+S+ + +L +D+L G N+ +WK+ +N +L++DDLRFVL EECPQ+ A NA ++V+E Y+RW KAN+KA+ YILAS+SEVLAKKHE M++AREIM+SLQE
Subjt:  MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQE

Query:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL
        MFGQ S QI+H++LKY+YN+RM EG+SVREHVL++MVHFNVA+MNGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI Y  TTLLNEL     L+
Subjt:  MFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

7.0e-06

21.59

Show/hide

Query:  SSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDR-------WIKANDKAKVYILASVSEVLAKKH-EGMVSARE
        SS   +++K  R  G+++  W S + + L    L +VL+E CP I +   P++      R       W++ +     +++ S+S+ L +++ +    A+E
Subjt:  SSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDR-------WIKANDKAKVYILASVSEVLAKKH-EGMVSARE

Query:  IMNSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQF
        + + L+ ++     + +   ++     RM E   + E V       +     G  +DE   VS I+   P S+  F
Subjt:  IMNSLQEMFGQPSGQIRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQF

Sequences

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CDS sequence

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ATGTCGTCCTCAATAATAGCCTTACTTAAAAGCGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATATGATTCTAGTTGTTGACGACCTTCGATT
CGTACTAACTGAGGAATGTCCTCAGATTCTTGCTCGTAACGCTCCTCAATCTGTTAAAGAGGCGTACGACCGCTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTT
TGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAATTCACTGCAGGAAATGTTTGGACAACCGTCTGGACAGATTCGG
CACGAATCCCTCAAATATGTTTATAACTCTCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTTGATCTGATGGTCCACTTCAACGTGGCTAAGATGAATGGAGC
GGTCATCGACGAGCAGAGTCAGGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCCGCAGCAATGCGGTGATGAACAAGATAGAGTATAACTCGACTA
CTCTCCTTAATGAACTACTGAGACTTTCCGGTCTCTTATGA

mRNA sequence

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Protein sequence

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MSSSIIALLKSDRLTGENFTTWKSNLNMILVVDDLRFVLTEECPQILARNAPQSVKEAYDRWIKANDKAKVYILASVSEVLAKKHEGMVSAREIMNSLQEMFGQPSGQIR
HESLKYVYNSRMKEGSSVREHVLDLMVHFNVAKMNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYNSTTLLNELLRLSGLL

Tan0011282 (gene) of Snake gourd v1 genome