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Tan0011325 (gene) of Snake gourd v1 genome

Gene IDTan0011325
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionProtein ROOT PRIMORDIUM DEFECTIVE 1-like
Genome locationLG07:74548975..74549421
RNA-Seq ExpressionTan0011325
SyntenyTan0011325
Gene Ontology termsNA
InterPro domainsIPR036312 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3436324.1 hypothetical protein FNV43_RR23416 [Rhamnella rubrinervis]4.9e-3048.65Show/hide
Query:  YPLAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVEEGER----------HRHSHHHRRRHHSHSPVAEE
        Y  + L +L L+P+ EGQ +   PP LPPRPLCSSQFALASYAC+++P +P P P PP P +     G R          H H H HR RHH  SP  E 
Subjt:  YPLAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVEEGER----------HRHSHHHRRRHHSHSPVAEE

Query:  CCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGR
        CCRW +Q+DS+CVC+ L+ L NFL RP+H ++V + + C V++ C GR
Subjt:  CCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGR

KAG6571480.1 hypothetical protein SDJN03_28208, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4665.62Show/hide
Query:  MGRLKIGYPLAALC-VLSL-IPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSA-----------DHVEEGERHRHSHHHRRR
        MGRL+  Y LAAL  VL+L IPE++ QAW+      PP+PLCSSQFALASYACARLPLNPEP+PI PP S            DH + G  H   HHH   
Subjt:  MGRLKIGYPLAALC-VLSL-IPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSA-----------DHVEEGERHRHSHHHRRR

Query:  HHSHSPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK
        H S SP+ EECCRWARQVDSECVC+AL HLANF+VRPSH FTVAITEDC+VTYSC GRIK
Subjt:  HHSHSPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK

XP_006444119.1 myosin-1 [Citrus clementina]5.8e-3151.03Show/hide
Query:  VLSLIPEMEGQAWAQ---TPPLLPPRPLCSSQFALASYACARLPLNP-EPIPIPPPPS-----ADHVEEGERHRHSHHHRRRH---HSHSPVAEECCRWA
        VL+++P+ME Q   +    PP  PPRPLC+SQFAL +YAC+ LP NP  P+P P PPS      DH E  +RH H H HR RH   H  +P  E CCRW 
Subjt:  VLSLIPEMEGQAWAQ---TPPLLPPRPLCSSQFALASYACARLPLNP-EPIPIPPPPS-----ADHVEEGERHRHSHHHRRRH---HSHSPVAEECCRWA

Query:  RQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK
        +QVD ECVC+ L+ L  FL RP H +TV + E C VTY+C+GR++
Subjt:  RQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK

XP_022155619.1 uncharacterized protein LOC111022709 [Momordica charantia]2.9e-6276.58Show/hide
Query:  MGRLKIGYPLAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVE-----------EGERHRHSHHHRRRHH
        MGR KI + LAALCVL LIP+MEGQAW+Q  PLLPPRPLCSSQFALASYACARLPLNPEPIPI PPPS    +            G  H+H HHHRRRHH
Subjt:  MGRLKIGYPLAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVE-----------EGERHRHSHHHRRRHH

Query:  SHSPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK
        +HSPVAEECCRWAR+VDSECVC+ALIHLANFL+RPSHAFTVAIT+DC+VTYSCNGRIK
Subjt:  SHSPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK

XP_022967638.1 uncharacterized protein LOC111467082 [Cucurbita maxima]2.4e-4868.79Show/hide
Query:  MGRLKIGYPLAALC-VLSLI-PEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVEEGERHRHSH---HHRRRHHSH----
        MGRL+  Y  AAL  VL+L+ P++E QAW+      PP+PLCSSQFALASYACARLPLN EP+PI PPPS  HVEEG RH H H   HHR  HH H    
Subjt:  MGRLKIGYPLAALC-VLSLI-PEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVEEGERHRHSH---HHRRRHHSH----

Query:  -SPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK
         SP+ EECCRWARQVD+ECVC+AL HLANF+VRPSH FTVAITEDC+VTYSC GRIK
Subjt:  -SPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK

TrEMBL top hitse value%identityAlignment
A0A1S2XS23 uncharacterized protein LOC1015005052.0e-2946.95Show/hide
Query:  MGRLKIGYPLA-ALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSAD-----------------HVEEGERHRHSH
        M R++I   +A AL +L+++P++EGQ     P    PRPLC SQFAL +YAC RLP  P P+P PP P  D                 H      HRH H
Subjt:  MGRLKIGYPLA-ALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSAD-----------------HVEEGERHRHSH

Query:  HHRRRHHSHSPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRI
         HR R H  +P  + CCRWAR+VDS+CVCE L+ L  FLVRP H +T+AI +DC +TYSC G I
Subjt:  HHRRRHHSHSPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRI

A0A2H5NKN0 Uncharacterized protein5.3e-3050.34Show/hide
Query:  VLSLIPEMEGQAWAQ---TPPLLPPRPLCSSQFALASYACARLPLNP-EPIPIPPPPS-----ADHVEEGERHRHSHHHRRRH---HSHSPVAEECCRWA
        VL+++P+ME Q   +    PP  PPRPLC+SQFAL +YAC+ LP NP  P+P P PPS      D  E  +RH H H HR RH   H  +P  E CCRW 
Subjt:  VLSLIPEMEGQAWAQ---TPPLLPPRPLCSSQFALASYACARLPLNP-EPIPIPPPPS-----ADHVEEGERHRHSHHHRRRH---HSHSPVAEECCRWA

Query:  RQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK
        +QVD ECVC+ L+ L  FL RP H +TV + E C VTY+C+GR++
Subjt:  RQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK

A0A6J1DQT3 uncharacterized protein LOC1110227091.4e-6276.58Show/hide
Query:  MGRLKIGYPLAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVE-----------EGERHRHSHHHRRRHH
        MGR KI + LAALCVL LIP+MEGQAW+Q  PLLPPRPLCSSQFALASYACARLPLNPEPIPI PPPS    +            G  H+H HHHRRRHH
Subjt:  MGRLKIGYPLAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVE-----------EGERHRHSHHHRRRHH

Query:  SHSPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK
        +HSPVAEECCRWAR+VDSECVC+ALIHLANFL+RPSHAFTVAIT+DC+VTYSCNGRIK
Subjt:  SHSPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK

A0A6J1HVN1 uncharacterized protein LOC1114670821.1e-4868.79Show/hide
Query:  MGRLKIGYPLAALC-VLSLI-PEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVEEGERHRHSH---HHRRRHHSH----
        MGRL+  Y  AAL  VL+L+ P++E QAW+      PP+PLCSSQFALASYACARLPLN EP+PI PPPS  HVEEG RH H H   HHR  HH H    
Subjt:  MGRLKIGYPLAALC-VLSLI-PEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVEEGERHRHSH---HHRRRHHSH----

Query:  -SPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK
         SP+ EECCRWARQVD+ECVC+AL HLANF+VRPSH FTVAITEDC+VTYSC GRIK
Subjt:  -SPVAEECCRWARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK

V4VVN6 Uncharacterized protein2.8e-3151.03Show/hide
Query:  VLSLIPEMEGQAWAQ---TPPLLPPRPLCSSQFALASYACARLPLNP-EPIPIPPPPS-----ADHVEEGERHRHSHHHRRRH---HSHSPVAEECCRWA
        VL+++P+ME Q   +    PP  PPRPLC+SQFAL +YAC+ LP NP  P+P P PPS      DH E  +RH H H HR RH   H  +P  E CCRW 
Subjt:  VLSLIPEMEGQAWAQ---TPPLLPPRPLCSSQFALASYACARLPLNP-EPIPIPPPPS-----ADHVEEGERHRHSHHHRRRH---HSHSPVAEECCRWA

Query:  RQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK
        +QVD ECVC+ L+ L  FL RP H +TV + E C VTY+C+GR++
Subjt:  RQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G63095.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.2e-1827.64Show/hide
Query:  LAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLN---------PEPIPI-PPPPSADHVEEGERHRHSH-----------------
        +A    L+L     GQ   Q P   PPRPLC+SQ+ALA+YAC+RLP++         P P PI PPPP  DH +    H H H                 
Subjt:  LAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLN---------PEPIPI-PPPPSADHVEEGERHRHSH-----------------

Query:  -----------------------------------------------------------------------HHRRRHHSH-----------SPVAEECCR
                                                                                HRRRHH H           +   +ECC+
Subjt:  -----------------------------------------------------------------------HHRRRHHSH-----------SPVAEECCR

Query:  WARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRI
        W +Q+D+ECVC+ L+ L   L +P H +TV + E C+VT+ C GR+
Subjt:  WARQVDSECVCEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGGTTGAAAATTGGTTACCCATTAGCAGCATTGTGTGTTTTATCTTTGATACCCGAGATGGAGGGGCAAGCATGGGCACAGACGCCGCCGCTGCTGCCTCCGCG
TCCCCTTTGTTCTTCCCAATTTGCACTGGCAAGCTACGCATGTGCGAGGCTACCTTTGAACCCAGAGCCCATCCCAATTCCTCCGCCTCCTTCGGCAGATCATGTAGAGG
AAGGGGAAAGGCATCGGCATTCCCATCACCATAGGCGCCGCCACCACAGCCACTCACCGGTGGCAGAGGAATGTTGCAGATGGGCGAGGCAGGTGGATAGCGAATGCGTG
TGTGAGGCATTGATTCACTTGGCCAACTTCCTGGTGCGGCCCTCGCATGCTTTTACTGTCGCCATCACAGAGGACTGCCTTGTCACTTACTCCTGCAATGGGCGAATCAA
GACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGGTTGAAAATTGGTTACCCATTAGCAGCATTGTGTGTTTTATCTTTGATACCCGAGATGGAGGGGCAAGCATGGGCACAGACGCCGCCGCTGCTGCCTCCGCG
TCCCCTTTGTTCTTCCCAATTTGCACTGGCAAGCTACGCATGTGCGAGGCTACCTTTGAACCCAGAGCCCATCCCAATTCCTCCGCCTCCTTCGGCAGATCATGTAGAGG
AAGGGGAAAGGCATCGGCATTCCCATCACCATAGGCGCCGCCACCACAGCCACTCACCGGTGGCAGAGGAATGTTGCAGATGGGCGAGGCAGGTGGATAGCGAATGCGTG
TGTGAGGCATTGATTCACTTGGCCAACTTCCTGGTGCGGCCCTCGCATGCTTTTACTGTCGCCATCACAGAGGACTGCCTTGTCACTTACTCCTGCAATGGGCGAATCAA
GACTTGA
Protein sequenceShow/hide protein sequence
MGRLKIGYPLAALCVLSLIPEMEGQAWAQTPPLLPPRPLCSSQFALASYACARLPLNPEPIPIPPPPSADHVEEGERHRHSHHHRRRHHSHSPVAEECCRWARQVDSECV
CEALIHLANFLVRPSHAFTVAITEDCLVTYSCNGRIKT