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Tan0011337 (gene) of Snake gourd v1 genome

Gene IDTan0011337
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG11:50621587..50622280
RNA-Seq ExpressionTan0011337
SyntenyTan0011337
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]2.7e-3544Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S  SK  KH WT  ED  LV+ LL LV  G WR DNGTF+PGYL QV+K+MKEK+   ++ V+PNLES V+ILKKQY  IAEM+GP CS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PFP F DL ++FG+DRATG   +TP +M S  A D  EDD+  +     + +P  ++   GED  +TPTS   + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-3141.5Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S+ SK  KH WT  +D  LV+ LL LV  GGWRA+N TF+P YL QV+K+MKEK+P  ++ V+ NLESRV+ LKKQY AIA+M+GPACS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PF  F DL ++FG+D+ATG   +   +MAS  A D  EDD++ +     + +P  ++   GED  +T  S T + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]2.7e-3544Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S  SK  KH WT  ED  LV+ LL LV  G WR DNGTF+PGYL QV+K+MKEK+   ++ V+PNLES V+ILKKQY  IAEM+GP CS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PFP F DL ++FG+DRATG   +TP +M S  A D  EDD+  +     + +P  ++   GED  +TPTS   + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]1.8e-3141.5Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S+ SK  KH WT  +D  LV+ LL LV  GGWRA+N TF+P YL QV+K+MKEK+P  ++ V+ NLESRV+ LKKQY AIA+M+GPACS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PF  F DL ++FG+D+ATG   +   +MAS  A D  EDD++ +     + +P  ++   GED  +T  S T + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]2.3e-3141Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S+ SK  KH WT  E+             GGWRA NGTF+PGYL QV+K+MKEK+P  ++ V+PNLE RV+ILKKQY AI EM+GP+CS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PFP F DL ++FG+DRATG   +TP +M S    D+ EDD++ +     + +P  ++   GED S+T TS   + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like8.6e-3241.5Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S+ SK  KH WT  +D  LV+ LL LV  GGWRA+N TF+P YL QV+K+MKEK+P  ++ V+ NLESRV+ LKKQY AIA+M+GPACS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PF  F DL ++FG+D+ATG   +   +MAS  A D  EDD++ +     + +P  ++   GED  +T  S T + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein1.3e-3544Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S  SK  KH WT  ED  LV+ LL LV  G WR DNGTF+PGYL QV+K+MKEK+   ++ V+PNLES V+ILKKQY  IAEM+GP CS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PFP F DL ++FG+DRATG   +TP +M S  A D  EDD+  +     + +P  ++   GED  +TPTS   + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

A0A5A7U3R2 Retrotransposon protein2.8e-3043.79Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACSLRNRPFPLFN
        +S+  K  +H WT  ED  LV+ LL L+  GGWR DNGTF+  YL Q++K+MKEK+   ++ V+PNLE R++ILKKQY     +     SL N+PFP F 
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACSLRNRPFPLFN

Query:  DLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEV
        DL V+FG+DRATG   +T  +M S    D  EDD++ +     + +P  +++  GED  +TPTS   +V
Subjt:  DLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEV

A0A5D3BC95 Retrotransposon protein8.6e-3241.5Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S+ SK  KH WT  +D  LV+ LL LV  GGWRA+N TF+P YL QV+K+MKEK+P  ++ V+ NLESRV+ LKKQY AIA+M+GPACS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PF  F DL ++FG+D+ATG   +   +MAS  A D  EDD++ +     + +P  ++   GED  +T  S T + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein1.3e-3544Show/hide
Query:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------
        +S  SK  KH WT  ED  LV+ LL LV  G WR DNGTF+PGYL QV+K+MKEK+   ++ V+PNLES V+ILKKQY  IAEM+GP CS          
Subjt:  SSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACS----------

Query:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG
                            L N+PFP F DL ++FG+DRATG   +TP +M S  A D  EDD+  +     + +P  ++   GED  +TPTS   + G
Subjt:  --------------------LRNRPFPLFNDLAVIFGKDRATGAGAQTPSDMASDAATDL-EDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGTTCGTCGTCAAAATCTAAGCAACCCAAACATATGTGGACTCCAGAAGAAGATGTCGTGTTGGTTGATGCATTATTGCACCTCGTCCATGTCGGTGGATGGCG
TGCCGACAATGGGACATTTAGACCTGGATATTTATCACAGGTAAAGAAGATAATGAAAGAGAAGATGCCAAATGTCGACCTACATGTGAGCCCTAATCTAGAGTCAAGAG
TGAGAATTTTAAAGAAGCAGTACAACGCGATTGCGGAGATGTTAGGTCCTGCATGTAGTCTTCGAAATAGGCCATTCCCTTTGTTTAACGATCTAGCAGTCATATTTGGA
AAAGATAGAGCAACAGGTGCCGGTGCACAAACTCCATCCGACATGGCATCGGATGCTGCAACTGACTTAGAAGATGATCTAAATCCTGATTTTCCCGGTTCATTCCTCCG
TGATCCACCGCCAGTGGACGTATCGATGGGCGAGGACACATCAGCCACACCTACGAGTCGAACACAAGAAGTCGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGTTCGTCGTCAAAATCTAAGCAACCCAAACATATGTGGACTCCAGAAGAAGATGTCGTGTTGGTTGATGCATTATTGCACCTCGTCCATGTCGGTGGATGGCG
TGCCGACAATGGGACATTTAGACCTGGATATTTATCACAGGTAAAGAAGATAATGAAAGAGAAGATGCCAAATGTCGACCTACATGTGAGCCCTAATCTAGAGTCAAGAG
TGAGAATTTTAAAGAAGCAGTACAACGCGATTGCGGAGATGTTAGGTCCTGCATGTAGTCTTCGAAATAGGCCATTCCCTTTGTTTAACGATCTAGCAGTCATATTTGGA
AAAGATAGAGCAACAGGTGCCGGTGCACAAACTCCATCCGACATGGCATCGGATGCTGCAACTGACTTAGAAGATGATCTAAATCCTGATTTTCCCGGTTCATTCCTCCG
TGATCCACCGCCAGTGGACGTATCGATGGGCGAGGACACATCAGCCACACCTACGAGTCGAACACAAGAAGTCGGATGA
Protein sequenceShow/hide protein sequence
MAGSSSKSKQPKHMWTPEEDVVLVDALLHLVHVGGWRADNGTFRPGYLSQVKKIMKEKMPNVDLHVSPNLESRVRILKKQYNAIAEMLGPACSLRNRPFPLFNDLAVIFG
KDRATGAGAQTPSDMASDAATDLEDDLNPDFPGSFLRDPPPVDVSMGEDTSATPTSRTQEVG