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Tan0011399 (gene) of Snake gourd v1 genome

Gene IDTan0011399
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG01:84525604..84525837
RNA-Seq ExpressionTan0011399
SyntenyTan0011399
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]1.4e-2376Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDE
        +SD+LAKKHE  ITAKEIMDS+Q MFGQ S+QARH ALK+I+NSRM EG+SVR+HVL++MVHFN+AESNGA IDE
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDE

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]2.0e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS
        +SD+LAKKHE  +T KEIMDS+Q MFGQ S QARH ALK+++NSRM EG+SVR+HVL++MVHFN+AESNG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.6e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS

A0A5A7V4M1 Gag/pol protein1.6e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS

A0A5D3CPJ6 Gag/pol protein1.6e-2270.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS
        +S++LAKKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMVHFN+AE NGA IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS

A0A6J1DFZ2 uncharacterized protein LOC1110200956.6e-2476Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDE
        +SD+LAKKHE  ITAKEIMDS+Q MFGQ S+QARH ALK+I+NSRM EG+SVR+HVL++MVHFN+AESNGA IDE
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDE

A0A6J1DWL0 uncharacterized protein LOC1110247349.6e-2370.13Show/hide
Query:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS
        +SD+LAKKHE  +T KEIMDS+Q MFGQ S QARH ALK+++NSRM EG+SVR+HVL++MVHFN+AESNG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATAACCGCCAAGGAAATCATGGATTCCGTGCAGGGTATGTTTGGACAACAATCCACACAGGCCCGACACAATGC
CCTAAAGTACATATTCAACTCAAGGATGCTAGAGGGTACATCTGTTCGGGATCATGTCCTGGATATGATGGTGCACTTCAACATCGCAGAGTCGAATGGTGCTTCCATCG
ATGAATCGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACATATTAGCCAAGAAGCATGAGGGCATGATAACCGCCAAGGAAATCATGGATTCCGTGCAGGGTATGTTTGGACAACAATCCACACAGGCCCGACACAATGC
CCTAAAGTACATATTCAACTCAAGGATGCTAGAGGGTACATCTGTTCGGGATCATGTCCTGGATATGATGGTGCACTTCAACATCGCAGAGTCGAATGGTGCTTCCATCG
ATGAATCGAGCTAG
Protein sequenceShow/hide protein sequence
MSDILAKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVHFNIAESNGASIDESS