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Tan0011406 (gene) of Snake gourd v1 genome

Gene IDTan0011406
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionProtein RADIALIS-like 3
Genome locationLG01:115046319..115048211
RNA-Seq ExpressionTan0011406
SyntenyTan0011406
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]3.3e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]3.3e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]2.4e-3694.25Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGR
        MASSS+TSARGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPLYKN G NGR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGR

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]3.6e-4094.68Show/hide
Query:  MASSSLTS-ARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQ
        MASSS+TS ARGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSLTS-ARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQ

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]1.5e-3389.53Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNG
        MASSS T+A GFYSSWTK+ENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNG

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein1.6e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A1S3CRN8 protein RADIALIS-like 41.6e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A5A7TE80 Protein RADIALIS-like 31.6e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A6J1DP29 protein RADIALIS-like 41.2e-3694.25Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGR
        MASSS+TSARGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPLYKN G NGR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGR

A0A6J1FCU5 protein RADIALIS-like 31.7e-4094.68Show/hide
Query:  MASSSLTS-ARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQ
        MASSS+TS ARGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN GCNGRGYADQ+
Subjt:  MASSSLTS-ARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 19.0e-1852.04Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAG--CNGRGYADQQRIK
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R++
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAG--CNGRGYADQQRIK

Q1G3C4 Protein RADIALIS-like 46.4e-1656.79Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN

Q6NNN0 Protein RADIALIS-like 31.4e-1861.18Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCN
        MAS+S++S+    +SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YELL+RDV  IE+G+   P Y++ G N
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCN

Q8GW75 Protein RADIALIS-like 56.4e-1652.69Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NAGCNGRGYAD
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG  D
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NAGCNGRGYAD

Q9SIJ5 Protein RADIALIS-like 22.0e-1759.55Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK-NAGCNGRG
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD++ IE G V  P YK   G + RG
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK-NAGCNGRG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.6e-1752.69Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NAGCNGRGYAD
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG  D
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NAGCNGRGYAD

AT1G75250.1 RAD-like 63.0e-1650.59Show/hide
Query:  TSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYAD
        +++R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK    N R   D
Subjt:  TSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYAD

AT2G18328.1 RAD-like 44.6e-1756.79Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein1.4e-1859.55Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK-NAGCNGRG
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD++ IE G V  P YK   G + RG
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK-NAGCNGRG

AT4G39250.1 RAD-like 16.4e-1952.04Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAG--CNGRGYADQQRIK
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R++
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAG--CNGRGYADQQRIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGAGCTCTCTCACGTCGGCACGTGGCTTTTACTCATCCTGGACAAAAAAAGAGAACAAGAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACGCCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCCGAGGAAGCAAGAAGGCTCTATGAGTTACTAGTGCGAGATGTCAAAAAAATAGAAGCTGGTCAAG
TTCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGAATCAAGAAATTTGATTATGCTACTACTAAAATGGAATCAGAGATGAAC
GATTCGTCACTTACATATAATGTTACTGACTCTGACAACGTTGAGGTAGCAGTAGGAATTACAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGAGCTCTCTCACGTCGGCACGTGGCTTTTACTCATCCTGGACAAAAAAAGAGAACAAGAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACGCCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGAAAAACAGCCGAGGAAGCAAGAAGGCTCTATGAGTTACTAGTGCGAGATGTCAAAAAAATAGAAGCTGGTCAAG
TTCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGAATCAAGAAATTTGATTATGCTACTACTAAAATGGAATCAGAGATGAAC
GATTCGTCACTTACATATAATGTTACTGACTCTGACAACGTTGAGGTAGCAGTAGGAATTACAAGATAG
Protein sequenceShow/hide protein sequence
MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRIKKFDYATTKMESEMN
DSSLTYNVTDSDNVEVAVGITR