CuGenDBv2

Gene ID	Tan0011427
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG02:68681946..68682368
RNA-Seq Expression	Tan0011427
Synteny	Tan0011427
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-45

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-45

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-45

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-45

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-45

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

6.6e-46

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

A0A5A7TU93 Gag/pol protein

6.6e-46

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

A0A5A7TWB9 Gag/pol protein

6.6e-46

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

A0A5A7V4M1 Gag/pol protein

6.6e-46

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

A0A5D3CPJ6 Gag/pol protein

6.6e-46

74.82

Show/hide

Query:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG
        MFGQ S QI+H++LKY+YN+RM +G+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR+NAVMNKI Y LTTLLNELQTF+SLMK KG
Subjt:  MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKG

Query:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK
        Q  GEAN+   +R+F +GS+SGTKS  SSSG KK +KKK
Subjt:  QADGEANLFAHSRRFQKGSSSGTKSCSSSSGLKKTQKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTTGGACAACCGTCTGGACAGATTCGACACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGAAGGGATCATCGGTGAGAGAACACGTTCTTGATTTGATGGT
CCACTTCAACGTGGCTGAGATGAATGGAGCGGTCATTGACGAGCAAAGTCAGGTATCGTTCATCCTAGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAACAATGCGG
TGATGAACAAGATAGAGTATAACCTTACTACTCTCCTTAATGAACTACAGACTTTCCAGTCTCTTATGAAGAATAAGGGACAGGCTGATGGAGAGGCAAATCTGTTTGCC
CATTCCAGAAGGTTCCAGAAAGGTTCATCCTCTGGGACTAAGTCCTGTAGCTCATCTTCTGGGCTTAAGAAGACCCAAAAGAAGAAAATATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MFGQPSGQIRHESLKYVYNSRMKKGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNELQTFQSLMKNKGQADGEANLFA
HSRRFQKGSSSGTKSCSSSSGLKKTQKKKI

Tan0011427 (gene) of Snake gourd v1 genome