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Tan0011440 (gene) of Snake gourd v1 genome

Gene IDTan0011440
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG10:22712188..22713057
RNA-Seq ExpressionTan0011440
SyntenyTan0011440
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-2053.85Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK ASN++ ASN Y GPITRSRSK +    D+  + +A +I+K L ++ K  +VIK+NPL+  S  + ++ ++ ++ DVMSVMMAD+ P+  MA+ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEI
        RKIN LMKAVEERD EI
Subjt:  RKINLLMKAVEERDLEI

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.5e-1952.89Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK AS ++AAS+TY GPITRSRSK +    D+   A+A +I+K L ++ K  +VIK+NPL++      ++  + ++ DVMSVMMADV  +  MA+ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEIGYLK
        RKINLLMK V+ERD EI  LK
Subjt:  RKINLLMKAVEERDLEIGYLK

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.5e-1952.89Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK AS ++AAS+TY GPITRSRSK +    D+   A+A +I+K L ++ K  +VIK+NPL++      ++  + ++ DVMSVMMADV  +  MA+ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEIGYLK
        RKINLLMK V+ERD EI  LK
Subjt:  RKINLLMKAVEERDLEIGYLK

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.5e-1952.89Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK AS ++AAS+TY GPITRSRSK +    D+   A+A +I+K L ++ K  +VIK+NPL++      ++  + ++ DVMSVMMADV  +  MA+ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEIGYLK
        RKINLLMK V+ERD EI  LK
Subjt:  RKINLLMKAVEERDLEIGYLK

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.5e-1952.89Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK AS ++AAS+TY GPITRSRSK +    D+   A+A +I+K L ++ K  +VIK+NPL++      ++  + ++ DVMSVMMADV  +  MA+ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEIGYLK
        RKINLLMK V+ERD EI  LK
Subjt:  RKINLLMKAVEERDLEIGYLK

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein1.1e-1750.43Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK ASN++ AS+ Y GPITRSRSK +    D+  + +A  I+K L ++ K  +VIK+N L+  S    N+ ++ ++ DV SVMMAD+  +  M +ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEI
        RKIN LMKAVEERD EI
Subjt:  RKINLLMKAVEERDLEI

A0A5A7UF60 Ty3-gypsy retrotransposon protein3.0e-1850.41Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKKVASN+  AS+ Y GPITRSRSK +    D+  + +  +I+K L ++ K  +VIK NPL+  S    +  ++ ++ DVMSVMMAD+  +  MA+ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEIGYLK
        +KIN LMKAVEERD EI  L+
Subjt:  RKINLLMKAVEERDLEIGYLK

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein1.9e-1746.28Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK AS ++ AS+ Y+GPITRSRSK +    D+  + +A +I+K L ++ K  + +K+NPL+  S  T ++ ++ +  DVMSVMMAD+  +  M  ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEIGYLK
        RK+N LMK +EERD EI  L+
Subjt:  RKINLLMKAVEERDLEIGYLK

A0A5D3BDK1 Ty3-gypsy retrotransposon protein6.6e-1847.93Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK ASN++ AS+ Y GPITR+RSK +    D+  + +A +I+K L ++ K  +VIK+NPL+  S     + ++ ++ DVMSV+M D+  +  MA+ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEIGYLK
        RKIN LMK VEERD EI  L+
Subjt:  RKINLLMKAVEERDLEIGYLK

A0A5D3BY54 Ty3-gypsy retrotransposon protein4.9e-2153.85Show/hide
Query:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME
        MASKK ASN++ ASN Y GPITRSRSK +    D+  + +A +I+K L ++ K  +VIK+NPL+  S  + ++ ++ ++ DVMSVMMAD+ P+  MA+ME
Subjt:  MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKME

Query:  RKINLLMKAVEERDLEI
        RKIN LMKAVEERD EI
Subjt:  RKINLLMKAVEERDLEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAAAGAAAGTCGCATCAAACACTGCTGCTGCAAGCAACACCTACATGGGTCCAATAACTCGCAGTCGTTCTAAAGAGGTCGAGGCAAGTGATGATCGAACCCC
TGATGCAATGGCAACAAACATCATCAAACTACTGGATAAAACTTCCAAAGGCAAGCTTGTCATCAAAGATAATCCCTTATTTCACCAGTCAACTCCAACTCCTAATCAAC
AGAGAGAGACATCAAATCAGGATGTAATGTCAGTCATGATGGCTGATGTGGACCCTGACGAAAGGATGGCGAAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTA
GAAGAAAGAGATCTTGAAATCGGCTACCTCAAAAGTTAA
mRNA sequenceShow/hide mRNA sequence
CTGACATCAATACAAATACAAAATTCATTTACACGTGTCTCATTTCCATTCGCTGGTTGAAATCTCGTGTGAACAAATTGGCACGCCCGGTGGGACCTCTCTACCTCTCA
TCTCTTTCTCCTTCAAATCAAATCAAATCAAGTCATGGCGTCAAAGAAAGTCGCATCAAACACTGCTGCTGCAAGCAACACCTACATGGGTCCAATAACTCGCAGTCGTT
CTAAAGAGGTCGAGGCAAGTGATGATCGAACCCCTGATGCAATGGCAACAAACATCATCAAACTACTGGATAAAACTTCCAAAGGCAAGCTTGTCATCAAAGATAATCCC
TTATTTCACCAGTCAACTCCAACTCCTAATCAACAGAGAGAGACATCAAATCAGGATGTAATGTCAGTCATGATGGCTGATGTGGACCCTGACGAAAGGATGGCGAAGAT
GGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGGCTACCTCAAAAGTTAAGTCCAAAACAAACAAACGACTCAATCCAGCCAAACCC
CTACAGTAAGAAACAACGACAAGGGGAAAAATATCGTCCAAGAGGAGCAACCGCCTCAACCAGCTTCAGTTGCTTCTTTGTCCGTCCAACAACTACAAGACATGATCATG
AGTTCTATCAGAGCTTAGTATAGCGGACCCGTTCAAAATCCTCTCACGTACTCCAAACTATACACCAAGAGGATTGGCAACTTGAGGATGCCCACAGGATACCAACCTCC
AAAATTCCAGCTGTCACACCCCCTCCCGAACCACTTGCTAACTTAGCACGGGAGATTTGCAGAAAGCCAACAGATTGTTGTTACCTCTTAACAATACCTG
Protein sequenceShow/hide protein sequence
MASKKVASNTAAASNTYMGPITRSRSKEVEASDDRTPDAMATNIIKLLDKTSKGKLVIKDNPLFHQSTPTPNQQRETSNQDVMSVMMADVDPDERMAKMERKINLLMKAV
EERDLEIGYLKS