CuGenDBv2

Gene ID	Tan0011452
Organism	Trichosanthes anguina (Snake gourd v1)
Description	arabinogalactan peptide 23-like
Genome location	LG09:57106553..57106744
RNA-Seq Expression	Tan0011452
Synteny	Tan0011452
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044702 - Arabinogalactan protein 23/40

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-13

76.19

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMKK AC ALF A  V+AVVASDESLSPA APGPSS+AS ALPALGSL+GASLVSF+ +  N
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

XP_022980143.1 arabinogalactan peptide 23-like [Cucurbita maxima]

2.1e-14

79.37

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMK  ACTALF A  V+AVVASDES SPA APGPSS+AS ALPALGSLIGASLVSF+ Y+LN
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]

3.6e-14

77.78

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMKK AC ALF A  V+AVVASDESLSPA APGPSS+AS ALPALGSL+GASLVSF+ Y  N
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]

1.2e-14

79.37

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMK  AC ALF A  V+AVVASDESLSPA APGPSS+AS ALPALGSLIGASLVSF+ Y+LN
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]

1.4e-13

74.6

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMKK AC ALF A  VS+ VA+DESLSPA APGPSS+AS ALPALGSL+GASLV+F+ Y LN
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CDX5 arabinogalactan peptide 23-like

1.4e-08

67.19

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFI-TYILN
        MEMKK AC ALF A  VSA VA+DES+SPA APGPSS+AS ALP L    GAS+VSF+  Y LN
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFI-TYILN

A0A6J1F3F5 arabinogalactan peptide 23-like

2.5e-13

74.6

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMKK AC ALF A  V+AVVASDESLSPA APGPSS+AS  LPALGSL+GASLVS + Y  N
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

A0A6J1H8I1 arabinogalactan peptide 23-like

1.1e-13

74.6

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMKK AC ALF A  ++AVVASDESLSPA APGPSS+AS ALPALGSL+GASLVSF+ +  N
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

A0A6J1IYE9 arabinogalactan peptide 23-like

1.0e-14

79.37

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMK  ACTALF A  V+AVVASDES SPA APGPSS+AS ALPALGSLIGASLVSF+ Y+LN
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

A0A6J1KX42 arabinogalactan peptide 23-like

1.7e-14

77.78

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMKK AC ALF A  V+AVVASDESLSPA APGPSS+AS ALPALGSL+GASLVSF+ Y  N
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

SwissProt top hits

e value

%identity

Alignment

Q8S2W4 Arabinogalactan protein 23

1.6e-09

60.32

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMKK AC  LF A  ++AV+A++E  +P  APGP+S+AS ALPALGSL+GASLVS  +Y L+
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

Arabidopsis top hits

e value

%identity

Alignment

AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)

3.2e-08

56.25

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSS-ASTALPALGSLIGASLVSFITYILN
        MEMKK AC  +F A  ++AV+A++     A APGP++S AS A+PALGSL+GASLVS   Y LN
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSS-ASTALPALGSLIGASLVSFITYILN

AT3G57690.1 arabinogalactan protein 23

1.2e-10

60.32

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Query:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN
        MEMKK AC  LF A  ++AV+A++E  +P  APGP+S+AS ALPALGSL+GASLVS  +Y L+
Subjt:  MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

Sequences

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CDS sequence

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ATGGAAATGAAGAAGTTTGCCTGCACCGCCCTCTTCGTCGCTACTATCGTCAGTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCTGCCACTGCACCTGGGCCAAGCAG
CTCCGCCTCCACCGCTCTTCCCGCCCTTGGATCGCTCATTGGCGCCTCGCTTGTTTCCTTCATCACCTACATCTTAAACTGA

mRNA sequence

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ATGGAAATGAAGAAGTTTGCCTGCACCGCCCTCTTCGTCGCTACTATCGTCAGTGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCTGCCACTGCACCTGGGCCAAGCAG
CTCCGCCTCCACCGCTCTTCCCGCCCTTGGATCGCTCATTGGCGCCTCGCTTGTTTCCTTCATCACCTACATCTTAAACTGA

Protein sequence

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MEMKKFACTALFVATIVSAVVASDESLSPATAPGPSSSASTALPALGSLIGASLVSFITYILN

Tan0011452 (gene) of Snake gourd v1 genome