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Tan0011483 (gene) of Snake gourd v1 genome

Gene IDTan0011483
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase)
Genome locationLG05:7012483..7016808
RNA-Seq ExpressionTan0011483
SyntenyTan0011483
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH81586.1 RNA-directed DNA polymerase (Reverse transcriptase) [Trifolium medium]8.4e-0643.08Show/hide
Query:  EFEREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR
        + +++VS   D   G WD E IQ+NFN  DA+ IL+IP L     DEI+W+Y+K+ +++VK   R
Subjt:  EFEREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR

PNY14146.1 ribonuclease H, partial [Trifolium pratense]7.9e-0441.27Show/hide
Query:  EREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR
        +++VS   D   G WD E IQ+NFN  DA+ +L+IP L      EI+W+Y+K+ + +VK   R
Subjt:  EREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR

TrEMBL top hitse value%identityAlignment
A0A2K3PFT2 Ribonuclease H (Fragment)3.8e-0441.27Show/hide
Query:  EREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR
        +++VS   D   G WD E IQ+NFN  DA+ +L+IP L      EI+W+Y+K+ + +VK   R
Subjt:  EREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR

A0A392M2U4 RNA-directed DNA polymerase (Reverse transcriptase) (Fragment)4.1e-0643.08Show/hide
Query:  EFEREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR
        + +++VS   D   G WD E IQ+NFN  DA+ IL+IP L     DEI+W+Y+K+ +++VK   R
Subjt:  EFEREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR

A0A7J6GVC4 Uncharacterized protein5.0e-0446.15Show/hide
Query:  DGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR
        DG WD   I+  FNM+DA+ IL +P  G  I+D+++W Y+K   +TVK G R
Subjt:  DGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGAR

A0A803NGM9 Uncharacterized protein1.0e-0450Show/hide
Query:  DGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKG
        DG+WD   ++S FNMEDA+ IL +P  G  I+D+I+W Y+K   +TVK G
Subjt:  DGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGCAGGGGTCGAGGGAGATTCAATCGGGAAAGAAAAGAGGGATCCAGATTTCAAACTGAAAGCGAAGAAGATCCAGAGGTAGATCCAAAGCTAAGCTCCTCCTC
AACCCCGTCGGGCCAGACAAGTGGCGGAGGCTCGTCGGCGACAGAGAAAAAGGAAACTGGAGCAACCGGCAGTGATGATTCAGGGAAGTTCTCCGATGATTTTCAAATTA
TATTAAATGCAATAAATTTTTCAGAATCAACGACCTCAAAGGGAGAATCAACGGCGGGATCCAAGGAGCATTCAAAGGCCCCTCGAAAGATTAATGGCGCTGCGATCTTG
GAGGTTACGAAGGGAATTGACTTCGACGAAACGGAACTAGAAAGGAAAGTCGGACTCATGGGGAAGATGAAGGTAGGGGAAACGGCAACTGCGGGCCCCTCCCCAATTAA
TTGTCTTTCTCAAAAGGTGGATGAGTTGGCCAATTCCAATACTGAGAAGCCAATCGGACCTGATGGAGAGATGGGCCTAACGTTCACGATGGGCTGCAATTCCATAGAAA
AACCGTTGGGGCAAAGTGTAGGGTCCAGAAAATCAGCGAATAATAAACAAAAGGCCCATCTGAACGAAGCTGTTGCGGGCCACGGAAATTGCATCAATATTTCGGGTAAG
AAGAGGGCACAACAACAATTGCTGGCAGACGAACCAAAGAAGAAGATCCGAACTGGTGTTGAAACTGAGTTTGAAAGAGAAGTTTCTAAATCTACGGATAAAGAGGATGG
TAACTGGGATGCAGAAAAGATCCAGAGTAATTTTAACATGGAAGATGCCCAACATATACTACAAATTCCCCGTTTGGGCTCTTCTATAGATGATGAAATTGTCTGGAAAT
ATAACAAACGCGAAATCTTCACAGTAAAGAAGGGAGCTCGACATCTTCATAATAATTCTATGGAACATATGGAGCTTCAGGAACGACATAATTCACAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGCAGGGGTCGAGGGAGATTCAATCGGGAAAGAAAAGAGGGATCCAGATTTCAAACTGAAAGCGAAGAAGATCCAGAGGTAGATCCAAAGCTAAGCTCCTCCTC
AACCCCGTCGGGCCAGACAAGTGGCGGAGGCTCGTCGGCGACAGAGAAAAAGGAAACTGGAGCAACCGGCAGTGATGATTCAGGGAAGTTCTCCGATGATTTTCAAATTA
TATTAAATGCAATAAATTTTTCAGAATCAACGACCTCAAAGGGAGAATCAACGGCGGGATCCAAGGAGCATTCAAAGGCCCCTCGAAAGATTAATGGCGCTGCGATCTTG
GAGGTTACGAAGGGAATTGACTTCGACGAAACGGAACTAGAAAGGAAAGTCGGACTCATGGGGAAGATGAAGGTAGGGGAAACGGCAACTGCGGGCCCCTCCCCAATTAA
TTGTCTTTCTCAAAAGGTGGATGAGTTGGCCAATTCCAATACTGAGAAGCCAATCGGACCTGATGGAGAGATGGGCCTAACGTTCACGATGGGCTGCAATTCCATAGAAA
AACCGTTGGGGCAAAGTGTAGGGTCCAGAAAATCAGCGAATAATAAACAAAAGGCCCATCTGAACGAAGCTGTTGCGGGCCACGGAAATTGCATCAATATTTCGGGTAAG
AAGAGGGCACAACAACAATTGCTGGCAGACGAACCAAAGAAGAAGATCCGAACTGGTGTTGAAACTGAGTTTGAAAGAGAAGTTTCTAAATCTACGGATAAAGAGGATGG
TAACTGGGATGCAGAAAAGATCCAGAGTAATTTTAACATGGAAGATGCCCAACATATACTACAAATTCCCCGTTTGGGCTCTTCTATAGATGATGAAATTGTCTGGAAAT
ATAACAAACGCGAAATCTTCACAGTAAAGAAGGGAGCTCGACATCTTCATAATAATTCTATGGAACATATGGAGCTTCAGGAACGACATAATTCACAAGAATGA
Protein sequenceShow/hide protein sequence
MDGRGRGRFNRERKEGSRFQTESEEDPEVDPKLSSSSTPSGQTSGGGSSATEKKETGATGSDDSGKFSDDFQIILNAINFSESTTSKGESTAGSKEHSKAPRKINGAAIL
EVTKGIDFDETELERKVGLMGKMKVGETATAGPSPINCLSQKVDELANSNTEKPIGPDGEMGLTFTMGCNSIEKPLGQSVGSRKSANNKQKAHLNEAVAGHGNCINISGK
KRAQQQLLADEPKKKIRTGVETEFEREVSKSTDKEDGNWDAEKIQSNFNMEDAQHILQIPRLGSSIDDEIVWKYNKREIFTVKKGARHLHNNSMEHMELQERHNSQE