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Tan0011528 (gene) of Snake gourd v1 genome

Gene IDTan0011528
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG10:64665264..64665688
RNA-Seq ExpressionTan0011528
SyntenyTan0011528
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033246.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-3686.02Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LPKCKRPE+  +V+DPNY KYHQVISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

KAA0039582.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3583.87Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS I +MLEQLLEKQLI+LPKCKRP++  +V+DPNY+KYHQVISHPVEKCFVLKELIL LA+EKKIELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

KAA0055958.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-3583.87Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH+VISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

KAA0062536.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-3583.87Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH+VISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]3.3e-3582.8Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH+VISHPVEKCFVLKELIL+LA+EK+IELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

TrEMBL top hitse value%identityAlignment
A0A5A7STD3 Ty3-gypsy retrotransposon protein8.5e-3786.02Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LPKCKRPE+  +V+DPNY KYHQVISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

A0A5A7T7Z3 Retrotransposon gag protein5.5e-3683.87Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS I +MLEQLLEKQLI+LPKCKRP++  +V+DPNY+KYHQVISHPVEKCFVLKELIL LA+EKKIELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

A0A5A7ULK6 Retrotransposon gag protein7.2e-3683.87Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH+VISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

A0A5A7V7Z6 Ty3-gypsy retrotransposon protein7.2e-3683.87Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G ERRRLTLKERQEKVYPFPDS IA+MLEQLLEKQLI+LP+CKRPE+  +V+DPNY KYH+VISHPVEKCFVLKELIL+LA+EKKIELDL+EV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

A0A5D3DYN4 Retrotransposon gag protein6.1e-3580.65Show/hide
Query:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV
        G E+R+ TLKERQEKVYPFPDS +A+MLEQLLE QLI+LP+CKRPE+ R+V+DPNY KYH+VISHPVEKCFVLKELILKLA+EKKIELD+DEV
Subjt:  GGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELILKLAKEKKIELDLDEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGAAAGAGAAGAAAGAAGTTAAGAACGTTGAGAAAATTTTCAAAGGCACTACCAAGAAATCGATGGTCACTAACACAACTCCTCTCAAAGGGAGGTGAGAGACG
CCGACTAACTCTAAAAGAGAGACAAGAAAAAGTTTACCCTTTTCCAGATTCAGGCATCGCAAATATGTTAGAACAACTCTTGGAAAAACAACTCATTGAACTACCTAAAT
GTAAGCGACCTGAAGAGATAAGAAGGGTCAATGATCCTAATTACTACAAGTATCACCAAGTCATTAGTCACCCGGTGGAAAAATGCTTTGTTCTAAAAGAGTTAATCCTA
AAATTAGCTAAAGAAAAGAAGATTGAGTTGGATCTAGATGAAGTAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGAAAGAGAAGAAAGAAGTTAAGAACGTTGAGAAAATTTTCAAAGGCACTACCAAGAAATCGATGGTCACTAACACAACTCCTCTCAAAGGGAGGTGAGAGACG
CCGACTAACTCTAAAAGAGAGACAAGAAAAAGTTTACCCTTTTCCAGATTCAGGCATCGCAAATATGTTAGAACAACTCTTGGAAAAACAACTCATTGAACTACCTAAAT
GTAAGCGACCTGAAGAGATAAGAAGGGTCAATGATCCTAATTACTACAAGTATCACCAAGTCATTAGTCACCCGGTGGAAAAATGCTTTGTTCTAAAAGAGTTAATCCTA
AAATTAGCTAAAGAAAAGAAGATTGAGTTGGATCTAGATGAAGTAGTCTAA
Protein sequenceShow/hide protein sequence
MSRKRRKKLRTLRKFSKALPRNRWSLTQLLSKGGERRRLTLKERQEKVYPFPDSGIANMLEQLLEKQLIELPKCKRPEEIRRVNDPNYYKYHQVISHPVEKCFVLKELIL
KLAKEKKIELDLDEVV