; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0011540 (gene) of Snake gourd v1 genome

Gene IDTan0011540
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionChlorophyll a/b-binding family protein
Genome locationLG02:4328597..4331375
RNA-Seq ExpressionTan0011540
SyntenyTan0011540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048752.1 hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa]3.5e-3674.8Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHL--EPSSSSTSKDLDLNSLSLGLNLQ-NAGKQV--DIHEARLMPGNT
        MGRH SEPTMVGTSIALLQERFRQLQK+KQ+RE+KELLNLL +SNRVDASIMHL  EP+ S T + LD NSLSLGLNL+ N GKQV  DIHEAR +P +T
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHL--EPSSSSTSKDLDLNSLSLGLNLQ-NAGKQV--DIHEARLMPGNT

Query:  KFWPGNSVMASRLRSFDSPDVDTTLHL
        KF P NS M S LRSFD+ +VDTTLHL
Subjt:  KFWPGNSVMASRLRSFDSPDVDTTLHL

KAE8646145.1 hypothetical protein Csa_016195, partial [Cucumis sativus]1.3e-3583.18Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDLNSLSLGLNLQ-NAGKQV--DIHEARLMPGNTKF
        MGRH+SEPTMVGTSIALLQERFRQLQK+KQRRE+KELLNLL +SNRVDASIMHLEP+ SSTS+DLD NSLSLGLNL+ NAGKQV  DIHEAR MPG+TKF
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDLNSLSLGLNLQ-NAGKQV--DIHEARLMPGNTKF

Query:  WPGNSVM
          GNS M
Subjt:  WPGNSVM

KAG6572236.1 hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2864.06Show/hide
Query:  LQMGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLMPGNTKFW
        +QM RHSSEP +VGTSIALLQERFRQLQK+K RREKKE++ LLSDSN            S STS+DL  NSLSLGLNL NAGKQVD HE RLMPG+TK  
Subjt:  LQMGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLMPGNTKFW

Query:  PGNSVMASRLRSFDSP----DVDTTLHL
        P         RS+D+P    DVDTTLHL
Subjt:  PGNSVMASRLRSFDSP----DVDTTLHL

KAG6589104.1 hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia]3.9e-2779.35Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVD-ASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLM
        MGRHSSE TM+GTSIALLQERFRQLQKDKQRREKKELL+LLSDSNRV+ +SIMHLE + SS S+DL+ +SLSLGLN  +AGKQVDIHEAR +
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVD-ASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLM

XP_023916992.1 uncharacterized protein LOC112028527 [Quercus suber]3.9e-1948.44Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRV------DASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLMPGN
        MGR S++PTMV +SIALLQERFRQL+K K+RRE+KELLNL +++ R+      + S +  +P  ++ ++    +S SL LNLQ   KQ D+ +A   P  
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRV------DASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLMPGN

Query:  TKFWPGNSVMASRLRSFDSPDVDTTLHL
        T  WP ++ MAS  RSF++ DVDT+LHL
Subjt:  TKFWPGNSVMASRLRSFDSPDVDTTLHL

TrEMBL top hitse value%identityAlignment
A0A0A0K617 Uncharacterized protein1.7e-4482.4Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDLNSLSLGLNLQ-NAGKQV--DIHEARLMPGNTKF
        MGRH+SEPTMVGTSIALLQERFRQLQK+KQRRE+KELLNLL +SNRVDASIMHLEP+ SSTS+DLD NSLSLGLNL+ NAGKQV  DIHEAR MPG+TKF
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDLNSLSLGLNLQ-NAGKQV--DIHEARLMPGNTKF

Query:  WPGNSVMASRLRSFDSPDVDTTLHL
          GNS M S  RSFDSP+VDTTLHL
Subjt:  WPGNSVMASRLRSFDSPDVDTTLHL

A0A2N9FNY6 Uncharacterized protein7.1e-1950.39Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDL-------NSLSLGLNLQNAGKQVDIHEARLMPG
        MGR S++PTMV +SIALLQERFRQL+K K+RRE+KELL L +++ R+     H EPS  S   ++         +S SLGLNLQ   KQ D  +A  MP 
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDL-------NSLSLGLNLQNAGKQVDIHEARLMPG

Query:  NTKFWPGNSVMASRLRSFDSPDVDTTLHL
            WP  + MAS  RSF++ DVDT+LHL
Subjt:  NTKFWPGNSVMASRLRSFDSPDVDTTLHL

A0A2P5ESL9 Uncharacterized protein3.0e-1748.48Show/hide
Query:  MGRHSSE-PTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDL---------NSLSLGLNLQNAGKQVDIHEARL
        MGR S +  T V +SIALLQERFRQLQK K+RRE+KEL+ +LS+S R+     H +PS+     +++L          SLSLGL+LQ+  KQ D++  R 
Subjt:  MGRHSSE-PTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHLEPSSSSTSKDLDL---------NSLSLGLNLQNAGKQVDIHEARL

Query:  MPGNTKFWPGNSVMASRLRSFDSPDVDTTLHL
         P  T  WP  S  AS  +SFDS D+DT+LHL
Subjt:  MPGNTKFWPGNSVMASRLRSFDSPDVDTTLHL

A0A5D3E685 Uncharacterized protein1.7e-3674.8Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHL--EPSSSSTSKDLDLNSLSLGLNLQ-NAGKQV--DIHEARLMPGNT
        MGRH SEPTMVGTSIALLQERFRQLQK+KQ+RE+KELLNLL +SNRVDASIMHL  EP+ S T + LD NSLSLGLNL+ N GKQV  DIHEAR +P +T
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHL--EPSSSSTSKDLDLNSLSLGLNLQ-NAGKQV--DIHEARLMPGNT

Query:  KFWPGNSVMASRLRSFDSPDVDTTLHL
        KF P NS M S LRSFD+ +VDTTLHL
Subjt:  KFWPGNSVMASRLRSFDSPDVDTTLHL

A0A7N2M9I5 Uncharacterized protein2.3e-1746.88Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRV------DASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLMPGN
        M R S++ TMV +SIALLQERFRQL+K K+RRE+KELLNL +++ R+      + S +  +P  ++ ++    +S SL LNLQ   KQ D+ +A   P  
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRV------DASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLMPGN

Query:  TKFWPGNSVMASRLRSFDSPDVDTTLHL
        T  WP  + MAS  RSF++ DVDT+LHL
Subjt:  TKFWPGNSVMASRLRSFDSPDVDTTLHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G16447.1 unknown protein2.2e-0431.82Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHL-EPSSSSTSKDLDLNS--------LSLGLNLQNAGKQVDIHEARLM
        + R   E  ++ +SI LLQERFRQLQ+ ++ R ++ELLN     N  D  + +  EP+S    + L +NS        LSL L   +  + ++       
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDASIMHL-EPSSSSTSKDLDLNS--------LSLGLNLQNAGKQVDIHEARLM

Query:  PGNTKFWPGNSVMASRLRSFDS-PDVDTTLHL
        P     WP       ++   D   DVDT+LHL
Subjt:  PGNTKFWPGNSVMASRLRSFDS-PDVDTTLHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTTGGTCTAATGGGATCCAATATGTCAACCAATTTACCTGATGGCATTTTCCATTCTGAGTGGCAGCAACAATTTGTGTTGCTGTTATTTATTAACGTGAACGA
GATGATATTGCTCTACAAGAAGCTTCTAAAGGTAGCACCAACAGAATGCTGCTGTGGAGCAGGAAGTGACAATCCCCTTGGCAGTGTTCTGCAGATGGGTAGGCACAGTA
GTGAACCCACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGGTTCAGACAGTTGCAGAAAGACAAGCAGAGGAGAGAGAAGAAGGAGCTTCTTAACCTGTTATCC
GATTCAAATAGAGTTGATGCCTCGATAATGCATTTAGAACCCAGTAGCTCGTCGACCTCAAAAGATTTGGACCTCAATTCCCTCTCCCTCGGCCTGAACTTGCAGAATGC
AGGTAAGCAAGTTGATATCCATGAAGCCAGGTTGATGCCTGGTAACACCAAGTTCTGGCCCGGAAATTCAGTCATGGCAAGTAGGTTAAGAAGTTTCGATAGTCCAGATG
TCGATACCACTCTTCATCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTTGGTCTAATGGGATCCAATATGTCAACCAATTTACCTGATGGCATTTTCCATTCTGAGTGGCAGCAACAATTTGTGTTGCTGTTATTTATTAACGTGAACGA
GATGATATTGCTCTACAAGAAGCTTCTAAAGGTAGCACCAACAGAATGCTGCTGTGGAGCAGGAAGTGACAATCCCCTTGGCAGTGTTCTGCAGATGGGTAGGCACAGTA
GTGAACCCACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGGTTCAGACAGTTGCAGAAAGACAAGCAGAGGAGAGAGAAGAAGGAGCTTCTTAACCTGTTATCC
GATTCAAATAGAGTTGATGCCTCGATAATGCATTTAGAACCCAGTAGCTCGTCGACCTCAAAAGATTTGGACCTCAATTCCCTCTCCCTCGGCCTGAACTTGCAGAATGC
AGGTAAGCAAGTTGATATCCATGAAGCCAGGTTGATGCCTGGTAACACCAAGTTCTGGCCCGGAAATTCAGTCATGGCAAGTAGGTTAAGAAGTTTCGATAGTCCAGATG
TCGATACCACTCTTCATCTATAG
Protein sequenceShow/hide protein sequence
MGLGLMGSNMSTNLPDGIFHSEWQQQFVLLLFINVNEMILLYKKLLKVAPTECCCGAGSDNPLGSVLQMGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLS
DSNRVDASIMHLEPSSSSTSKDLDLNSLSLGLNLQNAGKQVDIHEARLMPGNTKFWPGNSVMASRLRSFDSPDVDTTLHL