; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0011566 (gene) of Snake gourd v1 genome

Gene IDTan0011566
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L18
Genome locationLG04:9627417..9630713
RNA-Seq ExpressionTan0011566
SyntenyTan0011566
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022957246.1 uncharacterized protein LOC111458689 [Cucurbita moschata]3.2e-6467.98Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M FLNVPGLLS T TP W  FQ KPFNF +LK R+CDVKPLMIQARGNSKTESAK+RNRR QKK+                                   
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
             S +    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SP+CTT+EAAQHVGEELVKACEDLNIHEIS YDRNGFARGEKMQAFEIAIS YGF
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

XP_022987454.1 uncharacterized protein LOC111484997 [Cucurbita maxima]7.7e-6668.97Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M FLNVPGLLS TSTP W  FQ KPFNF +LK R+CDVKPLMIQARGNSKTESAK+RNRR+QKK+                                   
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
             S +    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SP+CTT+EAAQHVGEELVKACEDLNIHEIS YDRNGFARGEKMQAFEIAISRYGF
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

XP_023547360.1 uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo]8.5e-6568.47Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M FLNVPGLLS TSTP W  FQ KPFNF +LK R+CDVKPLMIQARGNSKTESAK+RNRR QKK+                                   
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
             S +    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SP+CTT+EAAQHVGEELVKACEDLNIHEIS YDRNGFARGEKMQAFEIAIS YGF
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

XP_038891854.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida]1.0e-6268.47Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M+FLN PGLLS TSTP   G Q KPFNF +LK+RNCDVKPL IQARGNSKTESAKI NRR+QKK+                          T     LS 
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
                    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SP+CTT+EAAQHVGEELVKACEDLNIHEIS YDRNGFARGEKMQAFEIAISRYG 
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

XP_038891856.1 50S ribosomal protein L18 isoform X2 [Benincasa hispida]1.0e-6268.47Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M+FLN PGLLS TSTP   G Q KPFNF +LK+RNCDVKPL IQARGNSKTESAKI NRR+QKK+                          T     LS 
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
                    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SP+CTT+EAAQHVGEELVKACEDLNIHEIS YDRNGFARGEKMQAFEIAISRYG 
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

TrEMBL top hitse value%identityAlignment
A0A0A0KQM5 Uncharacterized protein9.8e-5964.85Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M+F NV GLL  TS P   G Q KPF+FR+LK+++CDVKPL IQARGNSKTESAK+RNRRMQKK+                          T     LS 
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
                    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR +P+CTT+EAAQHVGEELVK C DLNIHEIS YDRNGFA GEKMQAFEIAISRYGF
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQ
        LQ
Subjt:  LQ

A0A1S3BEE0 50S ribosomal protein L186.3e-5864.04Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        ++F NV GLL  TS P   G Q K F+FR+LK+++CDVKPLMIQARGNSKTESAK+RNRR+QKK+                          T     LS 
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
                    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR + +CTT+EAAQHVGEELVK C DLNIHEIS YDRNGFARGEKMQAFEIAISRYGF
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

A0A6J1DC55 uncharacterized protein LOC1110191421.4e-6065.52Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M  +N+PGLLS +STP   GFQ KPFNF +LKS+NCD+KPL+IQARG+SK ESAKIRNRRMQKK+                          T     LS 
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
                    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR +P+CTT+EAAQ+VGEELVK CEDLNIHEIS YDRNGFARGEKMQAFEIAIS YGF
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

A0A6J1GYP6 uncharacterized protein LOC1114586891.6e-6467.98Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M FLNVPGLLS T TP W  FQ KPFNF +LK R+CDVKPLMIQARGNSKTESAK+RNRR QKK+                                   
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
             S +    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SP+CTT+EAAQHVGEELVKACEDLNIHEIS YDRNGFARGEKMQAFEIAIS YGF
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

A0A6J1JIY0 uncharacterized protein LOC1114849973.7e-6668.97Show/hide
Query:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL
        M FLNVPGLLS TSTP W  FQ KPFNF +LK R+CDVKPLMIQARGNSKTESAK+RNRR+QKK+                                   
Subjt:  MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSL

Query:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF
             S +    VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMR SP+CTT+EAAQHVGEELVKACEDLNIHEIS YDRNGFARGEKMQAFEIAISRYGF
Subjt:  EGLVFSWEESERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGF

Query:  LQR
        LQR
Subjt:  LQR

SwissProt top hitse value%identityAlignment
A5ELL1 50S ribosomal protein L188.7e-0432.95Show/hide
Query:  VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRS-PTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYG
        VF S K +YA ++DDQ  + L   S+++K MR S  T   ++AA+ VG+ L +      I E+  +DR G+    +++A   A    G
Subjt:  VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRS-PTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYG

A9FGF8 50S ribosomal protein L187.8e-0532.95Show/hide
Query:  VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRS-PTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYG
        VF S K +YA ++DD + K L + STL K ++ S      +EAA+ VG  + + C++  I ++  +DRNG+    ++ A   A    G
Subjt:  VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRS-PTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYG

P82195 50S ribosomal protein L18, chloroplastic6.0e-0530.43Show/hide
Query:  VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRS---PTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGFL
        VF S+K LY  ++DD     L   ST+QK++  +       T+E AQ +GE + K+C +  I +++ +DR G+    +++A   A   +G +
Subjt:  VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRS---PTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGFL

Q8SAY0 50S ribosomal protein L18, chloroplastic6.0e-0533.33Show/hide
Query:  VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRS---PTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYG
        VF S+K LYA ++DD     L   ST+ KS+ +        T+E AQ +GE + K+C +  I ++  +DR GF    +++A   A    G
Subjt:  VFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRS---PTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYG

Arabidopsis top hitse value%identityAlignment
AT1G14205.1 Ribosomal L18p/L5e family protein4.2e-3849.18Show/hide
Query:  GFQLKPF-NFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSLEGLVFSWEESERVFCSDK
        G +LKP+  F    +    VKP +I+ARGN++ ES K RNRR +KKF    +                                     +    VFCSDK
Subjt:  GFQLKPF-NFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSLEGLVFSWEESERVFCSDK

Query:  QLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGFL
        QLYAMLVDD NKKCLFY STLQKS+R  P CT +EAA+ VGEEL+KA  DL I+EIS YDRNG  RGE+MQAFEIAI+++GFL
Subjt:  QLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTTCTAAATGTTCCTGGTCTGCTATCGAACACTTCTACGCCCTGCTGGTGCGGGTTCCAGTTAAAGCCATTTAACTTCCGCACCTTGAAAAGTAGAAATTGTGA
TGTGAAGCCGTTGATGATCCAAGCAAGAGGGAACTCTAAAACAGAAAGCGCTAAAATTAGAAATAGGAGGATGCAGAAAAAGTTCGCCTCAGTTACCTCGTTGACTGTCA
CTTGTTTTGTATCTCTGTTGAGATCATTATTTAGGTGGAAAGTTGTTATTGTAACGGTCTTATTGAATAATTTGTCTCTTGAAGGGCTGGTTTTTTCGTGGGAGGAGAGT
GAGCGAGTATTCTGTTCTGATAAACAATTATATGCAATGTTGGTAGACGACCAGAACAAGAAGTGCCTCTTTTATGGAAGCACCTTACAGAAATCTATGCGTCGGAGTCC
CACGTGCACCACTCTCGAAGCTGCTCAACATGTTGGTGAAGAACTAGTGAAGGCATGCGAGGATTTGAACATACACGAAATATCATGTTATGATCGAAATGGGTTTGCTC
GCGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGCGCTATGGGTTCTTACAACGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTTCTAAATGTTCCTGGTCTGCTATCGAACACTTCTACGCCCTGCTGGTGCGGGTTCCAGTTAAAGCCATTTAACTTCCGCACCTTGAAAAGTAGAAATTGTGA
TGTGAAGCCGTTGATGATCCAAGCAAGAGGGAACTCTAAAACAGAAAGCGCTAAAATTAGAAATAGGAGGATGCAGAAAAAGTTCGCCTCAGTTACCTCGTTGACTGTCA
CTTGTTTTGTATCTCTGTTGAGATCATTATTTAGGTGGAAAGTTGTTATTGTAACGGTCTTATTGAATAATTTGTCTCTTGAAGGGCTGGTTTTTTCGTGGGAGGAGAGT
GAGCGAGTATTCTGTTCTGATAAACAATTATATGCAATGTTGGTAGACGACCAGAACAAGAAGTGCCTCTTTTATGGAAGCACCTTACAGAAATCTATGCGTCGGAGTCC
CACGTGCACCACTCTCGAAGCTGCTCAACATGTTGGTGAAGAACTAGTGAAGGCATGCGAGGATTTGAACATACACGAAATATCATGTTATGATCGAAATGGGTTTGCTC
GCGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGCGCTATGGGTTCTTACAACGATAG
Protein sequenceShow/hide protein sequence
MSFLNVPGLLSNTSTPCWCGFQLKPFNFRTLKSRNCDVKPLMIQARGNSKTESAKIRNRRMQKKFASVTSLTVTCFVSLLRSLFRWKVVIVTVLLNNLSLEGLVFSWEES
ERVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRRSPTCTTLEAAQHVGEELVKACEDLNIHEISCYDRNGFARGEKMQAFEIAISRYGFLQR