| GenBank top hits | e value | %identity | Alignment |
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| XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] | 4.9e-256 | 89.04 | Show/hide |
Query: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
V M EQASPARYFSTSF SQEQHHECRPQSQI+K+ TSQMTLDRRLIERS+ IDEGSRS DHL+W+LKHQAVEWP LLSSWPSLQM EYKISS E+
Subjt: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
Query: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
S N EMLVKDEPENVIALAKKALSASKQAA LVDESELVGT+LD S +DSLSKE RTV+STRLQDRRSKKR+ PKHVTTI ET N RGKD+RRKTSE
Subjt: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVE+LD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTP VSVERELMRRHIRN+LSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLGAYADLLT
YKLKRCCNSQGLGAYADLLT
Subjt: YKLKRCCNSQGLGAYADLLT
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| XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo] | 4.9e-256 | 89.04 | Show/hide |
Query: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
V M EQASPARYFSTSF SQEQHHECRPQSQI+K+ TSQMTLDRRLIERS+ IDEGSRS DHL+W+LKHQAVEWP LLSSWPSLQM EYKISS E+
Subjt: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
Query: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
S N EMLVKDEPENVIALAKKALSASKQAA LVDESELVGT+LD S +DSLSKE RTV+STRLQDRRSKKR+ PKHVTTI ET N RGKD+RRKTSE
Subjt: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVE+LD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTP VSVERELMRRHIRN+LSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLGAYADLLT
YKLKRCCNSQGLGAYADLLT
Subjt: YKLKRCCNSQGLGAYADLLT
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| XP_022143971.1 RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia] | 2.3e-261 | 90.27 | Show/hide |
Query: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
V MLH+QA+PARYFSTSF QEQHHECRPQSQI+K+ TSQMTLDRRLIERS+SIDEGSR DHLVW+LKHQA EWPGLLSSWPSLQMGEYKISSVE++
Subjt: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
Query: SNNTG-REMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLD---SSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRR
NNT RE+LV+DEPE+VIALAKKALSASKQAASLV+ESELVGTN+D SS SEDSL KE VKSTRLQDRRSK+RR PKHVTTI ETYN RGKDTRR
Subjt: SNNTG-REMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLD---SSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRR
Query: KTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
KT+ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIA
Subjt: KTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
Query: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITV
K+YQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GN KPSKEELAAHVGITV
Subjt: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITV
Query: EKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE
E+LDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTP VSVERELMRRHIRN+LSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLE
Subjt: EKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE
Query: NRALYKLKRCCNSQGLGAYADLLT
NRALYKLKRCCNSQGLGAYADLLT
Subjt: NRALYKLKRCCNSQGLGAYADLLT
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| XP_031742499.1 RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] | 1.8e-266 | 86.83 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPS-----SSSSSSSSSSVSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEG
MEAGLNLLSSSSPFISRCHPRSFL PS S SSSSSSSSV M EQASPARYFSTSF SQEQHHECRPQSQI+K+ +SQMTL+RRLIERS+ IDEG
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPS-----SSSSSSSSSSVSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEG
Query: SRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKER
SR DHL+W+LKHQAVEWPGLLSSWP +QM EYKISS+E+ S N EMLVKDEPENVIALAKKALSASKQAA LVDE+ELVGT+LD S +DSLSKE
Subjt: SRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKER
Query: RTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
RTV+STRLQDRRSKKR+ PKHVTTI E N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
Query: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSP
ENVY LLGKVTEAKNYFVRAGN KPSKEELAA VGITVE+ DKL+FMSRIPRSLQQPVWADQ+TTFQEITADSEVDTP VSVERELMRRHIRN+LSILSP
Subjt: ENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSP
Query: KERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
KERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Subjt: KERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
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| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 2.3e-277 | 91.02 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSSSSSSSSSSSVSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSD
MEAGLNLLSSSS FISRCHPRSFLHP S SSSSSSSSVSM HEQA PARYFSTSF SQEQHHECRPQSQI+K+ TSQ TLDRRLIERS+SIDEG+RS
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSSSSSSSSSSSVSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSD
Query: DHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKS
DHL+W+ KHQAVEWPGLLSSWPSLQM EYKISSVE++S N G EMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLD + +DSLSKE RTV+S
Subjt: DHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKS
Query: TRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
TRLQDRRSKKR+ PKHVTTI ET NS+GKD+RRKT ENFDPNDPLRLFLWGPETKKLLTV+EESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
Subjt: TRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEAL
Query: GLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
GLTCQRLQSQL SFR+SREKLINANLRMVVHIAKQYQGRGLSL DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
Subjt: GLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
Query: LLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRI
LLGKVTEAKNYFVRAGN KPSKEELAA VGITVE+LDKLLFMSRIPRSLQQPVW DQDTTFQEITADSE+DTP VSVERELMRRHIRN+LSILSPKERRI
Subjt: LLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRI
Query: IRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
IRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRC NSQGLGAYADLLT
Subjt: IRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A0A0KEQ6 RNA polymerase sigma factor | 8.7e-267 | 86.83 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPS-----SSSSSSSSSSVSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEG
MEAGLNLLSSSSPFISRCHPRSFL PS S SSSSSSSSV M EQASPARYFSTSF SQEQHHECRPQSQI+K+ +SQMTL+RRLIERS+ IDEG
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPS-----SSSSSSSSSSVSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEG
Query: SRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKER
SR DHL+W+LKHQAVEWPGLLSSWP +QM EYKISS+E+ S N EMLVKDEPENVIALAKKALSASKQAA LVDE+ELVGT+LD S +DSLSKE
Subjt: SRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKER
Query: RTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
RTV+STRLQDRRSKKR+ PKHVTTI E N RGKD+RRKTSE FDPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVE
Query: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQAGCRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSP
ENVY LLGKVTEAKNYFVRAGN KPSKEELAA VGITVE+ DKL+FMSRIPRSLQQPVWADQ+TTFQEITADSEVDTP VSVERELMRRHIRN+LSILSP
Subjt: ENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSP
Query: KERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
KERRIIRLRFGIEDG+EKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
Subjt: KERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLLT
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| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 2.4e-256 | 89.04 | Show/hide |
Query: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
V M EQASPARYFSTSF SQEQHHECRPQSQI+K+ TSQMTLDRRLIERS+ IDEGSRS DHL+W+LKHQAVEWP LLSSWPSLQM EYKISS E+
Subjt: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
Query: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
S N EMLVKDEPENVIALAKKALSASKQAA LVDESELVGT+LD S +DSLSKE RTV+STRLQDRRSKKR+ PKHVTTI ET N RGKD+RRKTSE
Subjt: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVE+LD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTP VSVERELMRRHIRN+LSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLGAYADLLT
YKLKRCCNSQGLGAYADLLT
Subjt: YKLKRCCNSQGLGAYADLLT
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| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 2.4e-256 | 89.04 | Show/hide |
Query: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
V M EQASPARYFSTSF SQEQHHECRPQSQI+K+ TSQMTLDRRLIERS+ IDEGSRS DHL+W+LKHQAVEWP LLSSWPSLQM EYKISS E+
Subjt: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
Query: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
S N EMLVKDEPENVIALAKKALSASKQAA LVDESELVGT+LD S +DSLSKE RTV+STRLQDRRSKKR+ PKHVTTI ET N RGKD+RRKTSE
Subjt: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVE+LD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTP VSVERELMRRHIRN+LSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLGAYADLLT
YKLKRCCNSQGLGAYADLLT
Subjt: YKLKRCCNSQGLGAYADLLT
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| A0A5A7V893 RNA polymerase sigma factor sigF | 6.9e-256 | 88.85 | Show/hide |
Query: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
V M EQASPARYFSTSF SQEQHHECRPQSQI+K+ TSQMTLDRRLIERS+ IDEGSRS DHL+W+LKHQAVEWP LLSSWPSLQM EYKISS E+
Subjt: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
Query: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
S N EMLVKDEPENVIALAKKALSASKQAA LVDESELVGT+LD S +DSLSKE RTV+STRLQ+RRSKKR+ PKHVTTI ET N RGKD+RRKTSE
Subjt: SNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSE
Query: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQFGREPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: NFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQ
Query: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGN KPSKEELAAHVGITVE+LD
Subjt: GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLD
Query: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
KL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTP VSVERELMRRHIRN+LSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Subjt: KLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRAL
Query: YKLKRCCNSQGLGAYADLLT
YKLKRCCNSQGLGAYADLLT
Subjt: YKLKRCCNSQGLGAYADLLT
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| A0A6J1CRW8 RNA polymerase sigma factor sigF, chloroplastic | 1.1e-261 | 90.27 | Show/hide |
Query: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
V MLH+QA+PARYFSTSF QEQHHECRPQSQI+K+ TSQMTLDRRLIERS+SIDEGSR DHLVW+LKHQA EWPGLLSSWPSLQMGEYKISSVE++
Subjt: VSMLHEQASPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERSISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERR
Query: SNNTG-REMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLD---SSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRR
NNT RE+LV+DEPE+VIALAKKALSASKQAASLV+ESELVGTN+D SS SEDSL KE VKSTRLQDRRSK+RR PKHVTTI ETYN RGKDTRR
Subjt: SNNTG-REMLVKDEPENVIALAKKALSASKQAASLVDESELVGTNLD---SSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRR
Query: KTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
KT+ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQLH FRVSREKLINANLRMVVHIA
Subjt: KTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIA
Query: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITV
K+YQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GN KPSKEELAAHVGITV
Subjt: KQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITV
Query: EKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE
E+LDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTP VSVERELMRRHIRN+LSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLE
Subjt: EKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLE
Query: NRALYKLKRCCNSQGLGAYADLLT
NRALYKLKRCCNSQGLGAYADLLT
Subjt: NRALYKLKRCCNSQGLGAYADLLT
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 1.7e-65 | 35.98 | Show/hide |
Query: IALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRT----VKSTRLQDRRSKKRRA-PKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFL
+A++ + + K AS E +G E L +E+ + V+STR +R++++ + K + IP +R ++ D NDPLR
Subjt: IALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRT----VKSTRLQDRRSKKRRA-PKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFL
Query: WGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQE
+ KLLTV+EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+QE
Subjt: WGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQE
Query: GSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSL
G GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ P EE+A G+++++L +L + PRSL
Subjt: GSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSL
Query: QQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGL
Q + +Q+ E+ AD E T + +E MR+ + +L L +E+++IR RFG+EDG+ KTL EIG M G+S+ERVRQ+E+ A KLK + L
Subjt: QQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGL
Query: GAY
Y
Subjt: GAY
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| P26683 RNA polymerase sigma factor SigA | 4.5e-63 | 40 | Show/hide |
Query: RRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVH
R ++ + D +RL+L +LL EE EL +I DL+ L+ V+ RL + R+P EWAEA+ L + +LH R +++K++ +NLR+VV
Subjt: RRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVH
Query: IAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGI
IAK+Y RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + KP++EE+A + +
Subjt: IAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGI
Query: TVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQ
T+EKL + +++P SL+ P+ ++D+ + +S+ +TP V + L+R + +L LSP+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ
Subjt: TVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQ
Query: LENRALYKLK
+E +AL KL+
Subjt: LENRALYKLK
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| P38023 RNA polymerase sigma factor SigA1 | 9.5e-61 | 37.57 | Show/hide |
Query: VKSTRLQDRRSKKRRAPKHV----TTIPETYNSRGKDTRRKTSENFD-------------PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVK
+K + +RS +++A V TTI T + D E+ D D +RL+L +LL EE EL QI DL+ L+ ++
Subjt: VKSTRLQDRRSKKRRAPKHV----TTIPETYNSRGKDTRRKTSENFD-------------PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVK
Query: ARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQS
L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAK+Y RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+
Subjt: ARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQS
Query: IRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPGVSVER
I +AI + SRTIRLP ++Y + ++ + + KP++EE+A + +T+EKL + +++P SL+ P+ ++D+ + I AD E TP V +
Subjt: IRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPGVSVER
Query: ELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
L+R + +LS LSP+ER ++RLR+G++DG+ KTL EIG +F +++ER+RQ+E +AL KL+
Subjt: ELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
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| Q31ME3 RNA polymerase sigma factor SigA2 | 2.7e-55 | 38.87 | Show/hide |
Query: TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAK
+S + P D +R +L +LLT +EE Q+Q LM+L + + L+ + G EP+ EWA A+ L + L Q+ + ++ K+I ANLR+VV IAK
Subjt: TSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAK
Query: QYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVE
+YQ R + DL+QEG+LGL + VEKF P G +F+TYAYWWIRQ+I +AI + SRTIRLP ++ L K+ + + + + ELA + + +E
Subjt: QYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVE
Query: KLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLEN
++ + + M+R P SL V QDT QE+ D E +P VE+E +RR +RN+++ L+P+++ +I LR+G+++G +L ++G +S+ERVR+LE
Subjt: KLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLEN
Query: RALYKLKRCCNSQGLGAYA
+A+ L+R S+ L YA
Subjt: RALYKLKRCCNSQGLGAYA
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 4.3e-146 | 54.12 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSSSSSSSSSSSVSMLHEQA-----------SPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERS
MEA NL+SSS F ++ H + SS SS SSV MLH+Q S +R+F S SQE E RP S +++ TSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSSSSSSSSSSSVSMLHEQA-----------SPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERS
Query: ISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESEL-VGTNLD---SS
+S E D+ +L H W L+S S E K+ +V L E +V+ALA+KALSASKQAA LVD++E N+ S+
Subjt: ISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESEL-VGTNLD---SS
Query: PSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS
S SL ++ V+S R +RR+K RRAPK E Y + ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L+S
Subjt: PSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS
Query: QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Q G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+I
Subjt: QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Query: FEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRH
F++SRTIRLPENVY LLGKV+EA+ V+ GN +PSKEELA HVG++ EKLDKLL+ +R P S+QQP+W+DQDTTFQEIT DS ++TP +SV ++LMR H
Subjt: FEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRH
Query: IRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL
+RN+L++LSPKERRII+LRFGI+ GK+++L EIG ++GLSKERVRQLE+RALY+LK+ NS GL AYADLL
Subjt: IRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 1.2e-66 | 35.98 | Show/hide |
Query: IALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRT----VKSTRLQDRRSKKRRA-PKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFL
+A++ + + K AS E +G E L +E+ + V+STR +R++++ + K + IP +R ++ D NDPLR
Subjt: IALAKKALSASKQAASLVDESELVGTNLDSSPSEDSLSKERRT----VKSTRLQDRRSKKRRA-PKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFL
Query: WGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQE
+ KLLTV+EE EL IQDL+ L+ ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+QE
Subjt: WGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQE
Query: GSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSL
G GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ P EE+A G+++++L +L + PRSL
Subjt: GSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSL
Query: QQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGL
Q + +Q+ E+ AD E T + +E MR+ + +L L +E+++IR RFG+EDG+ KTL EIG M G+S+ERVRQ+E+ A KLK + L
Subjt: QQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGL
Query: GAY
Y
Subjt: GAY
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| AT1G64860.1 sigma factor A | 1.0e-33 | 29.97 | Show/hide |
Query: TRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVV
T K + +R ++ G ++ +L+ E L +I+ + LD+ K+RL+ + G EP+ + A +L ++ LQ+ L ++REKL +N+R+V+
Subjt: TRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVV
Query: HIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVG
IA++Y G + DL+Q G +GL++ +EKF G R +TY YWWIRQ + +A+ ++SRT+RLP +++ LG + AK G PS + +A +
Subjt: HIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVG
Query: ITVEKLDKLLFMSRIPRSLQQPVWADQD----TTFQEITADSEVD-TPGVSVERELMRRHIRNILS-ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGL
++ +K+ SL + + + T AD+ ++ P + ++ + ++S L +E+ IIRL +G+ D + T +I GL
Subjt: ITVEKLDKLLFMSRIPRSLQQPVWADQD----TTFQEITADSEVD-TPGVSVERELMRRHIRNILS-ILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGL
Query: SKERVRQLENRALYKLKRCCNSQGLGA
S+ERVRQ+ AL KLK + + A
Subjt: SKERVRQLENRALYKLKRCCNSQGLGA
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| AT2G36990.1 RNApolymerase sigma-subunit F | 3.0e-147 | 54.12 | Show/hide |
Query: MEAGLNLLSSSSPFISRCHPRSFLHPSSSSSSSSSSSVSMLHEQA-----------SPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERS
MEA NL+SSS F ++ H + SS SS SSV MLH+Q S +R+F S SQE E RP S +++ TSQ+TL+RR +
Subjt: MEAGLNLLSSSSPFISRCHPRSFLHPSSSSSSSSSSSVSMLHEQA-----------SPARYFSTSFPSQEQHHECRPQSQIIKE--TSQMTLDRRLIERS
Query: ISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESEL-VGTNLD---SS
+S E D+ +L H W L+S S E K+ +V L E +V+ALA+KALSASKQAA LVD++E N+ S+
Subjt: ISIDEGSRSSDDHLVWKLKHQAVEWPGLLSSWPSLQMGEYKISSVERRSNNTGREMLVKDEPENVIALAKKALSASKQAASLVDESEL-VGTNLD---SS
Query: PSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS
S SL ++ V+S R +RR+K RRAPK E Y + ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L+S
Subjt: PSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQS
Query: QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Q G EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+I
Subjt: QFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAI
Query: FEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRH
F++SRTIRLPENVY LLGKV+EA+ V+ GN +PSKEELA HVG++ EKLDKLL+ +R P S+QQP+W+DQDTTFQEIT DS ++TP +SV ++LMR H
Subjt: FEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRH
Query: IRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL
+RN+L++LSPKERRII+LRFGI+ GK+++L EIG ++GLSKERVRQLE+RALY+LK+ NS GL AYADLL
Subjt: IRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL
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| AT3G53920.1 RNApolymerase sigma-subunit C | 2.8e-36 | 26.33 | Show/hide |
Query: REMLVKDEPENVIALAKKALS---ASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENF
R+++++ L K LS S + L D +ELV D++P++ RR VK + RRS +++P R T N
Subjt: REMLVKDEPENVIALAKKALS---ASKQAASLVDESELVGTNLDSSPSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENF
Query: DPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGR
D R + + +++ + E+E+ ++ + ++ ++ +L+ + G+ +L WA A G+ + L LH R++L+ + +V+ +A+ Y+G
Subjt: DPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGR
Query: GLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCK-PSKEELAAHVGITVEKLDK
G++ DL+Q G +G+++ E+F G +F+TY +WIR+S+ + H+R + +P ++ + + +A+ + K + EE+A G +V+K+
Subjt: GLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCK-PSKEELAAHVGITVEKLDK
Query: LLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALY
++ S+ + V T F E T D+ +++P +V R+ RR I ++L L P+E++++ LR+G++D + K+L EIG + +SKE +R++E RA+
Subjt: LLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALY
Query: KLKRCCNSQGLGAY
KL+ N++ L Y
Subjt: KLKRCCNSQGLGAY
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| AT5G13730.1 sigma factor 4 | 5.0e-41 | 31.2 | Show/hide |
Query: KQAASLVDESELVGTNLDSS----PSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQ
K + +LV V +DSS P + + E+R R+ ++RR + PE + G + +T + + + G L+
Subjt: KQAASLVDESELVGTNLDSS----PSEDSLSKERRTVKSTRLQDRRSKKRRAPKHVTTIPETYNSRGKDTRRKTSENFDPNDPLRLFLWGPETKKLLTVQ
Query: EESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKF
EE +L + +++ L+N+ ++ E V A G + L + +REK+ R+VV IA YQG+GL+L DL+QEGS+GL++ E+F
Subjt: EESELIVQIQDLMILDNVKARLQSQFGREPTLVEWAEALGLTCQRLQSQLHSFRVSREKLINANLRMVVHIAKQYQGRGLSLHDLLQEGSLGLMKSVEKF
Query: KPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTF
P G + +TY YWWI+Q+I +AI SR ++LP +++ L KV EA N R +PS EE+A H+ + V + + SR P SL + + T
Subjt: KPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNCKPSKEELAAHVGITVEKLDKLLFMSRIPRSLQQPVWADQDTTF
Query: QEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
QEI + P V+RE M+ I +L L+ +E R++ L FG+ + EIG LS+ERVRQ+ AL KL+ N L Y
Subjt: QEITADSEVDTPGVSVERELMRRHIRNILSILSPKERRIIRLRFGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
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