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Tan0011643 (gene) of Snake gourd v1 genome

Gene IDTan0011643
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG08:43420467..43422257
RNA-Seq ExpressionTan0011643
SyntenyTan0011643
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.2e-1241.6Show/hide
Query:  LQGIKSVKAGKFDSEFSYIEPEALWYR-----VHTGHI------MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKK----------GQTV
        L+ I  +  G+ +SE    EP   W R     + TG +       LSTLSVLRDN+ VVEIEL +PD LP         +S L++           G   
Subjt:  LQGIKSVKAGKFDSEFSYIEPEALWYR-----VHTGHI------MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKK----------GQTV

Query:  LLRGNNVCWLHAVFRAKLAGSPGGG
        ++RG++VCWLHAVFRAK  G PGGG
Subjt:  LLRGNNVCWLHAVFRAKLAGSPGGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.1e-1161.11Show/hide
Query:  LSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGGAT
        LSTLSVLRDN+AVVEIEL VPD LP          S       T ++RG++VCWLHAVFRAK AG PGGG T
Subjt:  LSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGGAT

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]4.1e-1150.56Show/hide
Query:  LSTLSVLRDNNAVVEIELLVPDILP-----------------YCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGGAT
        LSTLSVL DN+AVVEIEL VPD LP                   L++  C     V  G   ++RG++VCWLHAVFRAK+AGSP GG T
Subjt:  LSTLSVLRDNNAVVEIELLVPDILP-----------------YCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGGAT

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]3.2e-1157.53Show/hide
Query:  MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCIN--SGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGG
        +LSTLSVL DN+AVVEIEL VPD LP   Y    +   S +  +G   ++RG++VCWLHAV RAK+AG PGGG
Subjt:  MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCIN--SGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.2e-1241.6Show/hide
Query:  LQGIKSVKAGKFDSEFSYIEPEALWYR-----VHTGHI------MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKK----------GQTV
        L+ I  +  G+ +SE    EP   W R     + TG +       LSTLSVLRDN+ VVEIEL +PD LP         +S L++           G   
Subjt:  LQGIKSVKAGKFDSEFSYIEPEALWYR-----VHTGHI------MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKK----------GQTV

Query:  LLRGNNVCWLHAVFRAKLAGSPGGG
        ++RG++VCWLHAVFRAK  G PGGG
Subjt:  LLRGNNVCWLHAVFRAKLAGSPGGG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.1e-1241.6Show/hide
Query:  LQGIKSVKAGKFDSEFSYIEPEALWYR-----VHTGHI------MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKK----------GQTV
        L+ I  +  G+ +SE    EP   W R     + TG +       LSTLSVLRDN+ VVEIEL +PD LP         +S L++           G   
Subjt:  LQGIKSVKAGKFDSEFSYIEPEALWYR-----VHTGHI------MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKK----------GQTV

Query:  LLRGNNVCWLHAVFRAKLAGSPGGG
        ++RG++VCWLHAVFRAK  G PGGG
Subjt:  LLRGNNVCWLHAVFRAKLAGSPGGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein5.3e-1261.11Show/hide
Query:  LSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGGAT
        LSTLSVLRDN+AVVEIEL VPD LP          S       T ++RG++VCWLHAVFRAK AG PGGG T
Subjt:  LSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGGAT

A0A5D3C0X3 Retrotrans_gag domain-containing protein2.0e-1150.56Show/hide
Query:  LSTLSVLRDNNAVVEIELLVPDILP-----------------YCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGGAT
        LSTLSVL DN+AVVEIEL VPD LP                   L++  C     V  G   ++RG++VCWLHAVFRAK+AGSP GG T
Subjt:  LSTLSVLRDNNAVVEIELLVPDILP-----------------YCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGGAT

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.5e-1157.53Show/hide
Query:  MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCIN--SGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGG
        +LSTLSVL DN+AVVEIEL VPD LP   Y    +   S +  +G   ++RG++VCWLHAV RAK+AG PGGG
Subjt:  MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCIN--SGLVKKGQTVLLRGNNVCWLHAVFRAKLAGSPGGG

A0A5D3D150 Reverse transcriptase1.1e-1241.6Show/hide
Query:  LQGIKSVKAGKFDSEFSYIEPEALWYR-----VHTGHI------MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKK----------GQTV
        L+ I  +  G+ +SE    EP   W R     + TG +       LSTLSVLRDN+ VVEIEL +PD LP         +S L++           G   
Subjt:  LQGIKSVKAGKFDSEFSYIEPEALWYR-----VHTGHI------MLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKK----------GQTV

Query:  LLRGNNVCWLHAVFRAKLAGSPGGG
        ++RG++VCWLHAVFRAK  G PGGG
Subjt:  LLRGNNVCWLHAVFRAKLAGSPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAAGCTCGAGCCAATTCTGAAGTTAACTTACTACAGGGTATAAAATCTGTAAAGGCTGGAAAATTTGATAGTGAGTTTTCTTATATTGAGCCCGAGGCTTTATG
GTACCGTGTGCACACAGGTCATATAATGTTGTCGACGTTGAGTGTACTTCGTGACAACAATGCTGTCGTAGAGATCGAGCTCCTGGTACCTGACATCCTGCCATATTGTT
TGTACATAAGAGGTTGTATAAACAGTGGTTTGGTAAAAAAGGGTCAAACAGTGTTGTTGAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTTTCGGGCTAAGTTAGCT
GGTAGTCCGGGAGGGGGTGCGACAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAAGCTCGAGCCAATTCTGAAGTTAACTTACTACAGGGTATAAAATCTGTAAAGGCTGGAAAATTTGATAGTGAGTTTTCTTATATTGAGCCCGAGGCTTTATG
GTACCGTGTGCACACAGGTCATATAATGTTGTCGACGTTGAGTGTACTTCGTGACAACAATGCTGTCGTAGAGATCGAGCTCCTGGTACCTGACATCCTGCCATATTGTT
TGTACATAAGAGGTTGTATAAACAGTGGTTTGGTAAAAAAGGGTCAAACAGTGTTGTTGAGAGGTAACAATGTCTGTTGGCTTCATGCCGTCTTTCGGGCTAAGTTAGCT
GGTAGTCCGGGAGGGGGTGCGACAATCTAA
Protein sequenceShow/hide protein sequence
MQEARANSEVNLLQGIKSVKAGKFDSEFSYIEPEALWYRVHTGHIMLSTLSVLRDNNAVVEIELLVPDILPYCLYIRGCINSGLVKKGQTVLLRGNNVCWLHAVFRAKLA
GSPGGGATI