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Tan0011677 (gene) of Snake gourd v1 genome

Gene IDTan0011677
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:23241695..23241916
RNA-Seq ExpressionTan0011677
SyntenyTan0011677
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1769.7Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
        MT+ EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE ALRVE+SL
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
KAA0057197.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-1764.29Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDR
        ++++EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W  FS+LVETALRVE+S+V ++
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDR
KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]1.1e-1769.7Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
        MTI EYEKK+TELS YA+ ++  E++RCKRFE+GLR EIRTPVTA ++W +FSKLVE ALRVE+SL
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.4e-1769.7Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
        MT+ EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE ALRVE+SL
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
XP_008464978.1 PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo]1.8e-1764.29Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDR
        ++++EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W  FS+LVETALRVE+S+V ++
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDR
TrEMBL top hitse value%identityAlignment
A0A5A7SX06 DNA/RNA polymerases superfamily protein8.8e-1865.71Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDR
        +++ EYEKK+TELS+YA  IVASE DRC+RFE GLR EIRTPVTA ++W  FS+LVETALRVE+S+  ++
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDR
A0A5A7T1M0 Reverse transcriptase6.7e-1869.7Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
        MT+ EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE ALRVE+SL
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
A0A5A7UZM6 Gag protease polyprotein-like protein5.1e-1869.7Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
        MTI EYEKK+TELS YA+ ++  E++RCKRFE+GLR EIRTPVTA ++W +FSKLVE ALRVE+SL
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
A0A5D3BB91 Reverse transcriptase6.7e-1869.7Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
        MT+ EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA ++W +FSKLVE ALRVE+SL
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSL
A0A5D3D5E2 Gag/pol protein8.8e-1864.29Show/hide
Query:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDR
        ++++EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W  FS+LVETALRVE+S+V ++
Subjt:  MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGGTGCAAAAGGTTCGAGGATGGTTTACGAGC
AGAGATCCGAACACCTGTGACAGCAAGTTCTGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTACATGACAGAATGGGAAAAT
GA
mRNA sequenceShow/hide mRNA sequence
ATGACTATAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGGTGCAAAAGGTTCGAGGATGGTTTACGAGC
AGAGATCCGAACACCTGTGACAGCAAGTTCTGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTACATGACAGAATGGGAAAAT
GA
Protein sequenceShow/hide protein sequence
MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWAEFSKLVETALRVERSLVHDRMGK