CuGenDBv2

Gene ID	Tan0011678
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	LG03:66646412..66648349
RNA-Seq Expression	Tan0011678
Synteny	Tan0011678
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008449288.1 PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo]

2.6e-206

93.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
        TSQ QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA
        ENESLCSTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPK+VES EKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA

Query:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDE
        N+A IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLH+PPEPIQVRHVQLDILDQDDDSSDY SDE
Subjt:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

1.1e-207

94.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
         SQ QSSPSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKD  
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA
        EN+SLCSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPK+VES EKTIEPMIEPPAPV TDANPLA
Subjt:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA

Query:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD
        NLA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLRPNALPGLH+PPEPIQVR VQLDILDQDDDSSDY SD
Subjt:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_022963248.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata]

9.3e-204

94.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
         SQ QS+PSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT D  
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPL
        ENESLCS TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY FADLDVGLPKSVES EKTIEPMIE PAPV TDANPL
Subjt:  ENESLCS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPL

Query:  ANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR NALPGLHRP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

2.2e-205

95.1

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
         SQ QS+PSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT D  
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLC-STTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPL
        ENESLC STTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVES EKTIEPMIEPPAPV TDANPL
Subjt:  ENESLC-STTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPL

Query:  ANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR NALPGLHRP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

4.3e-209

94.35

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
        TSQ QSSPST LDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVK KD  
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA
        ENESLCSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LD+GLPK+VES EKTIEPMIEPPAPV TDANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA

Query:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDE
        N+A IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVDEPQLRPNA PGLH+PPEPIQVRHVQLDILDQDDDSSDY SDE
Subjt:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

1.3e-206

93.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
        TSQ QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA
        ENESLCSTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPK+VES EKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA

Query:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDE
        N+A IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLH+PPEPIQVRHVQLDILDQDDDSSDY SDE
Subjt:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

1.3e-206

93.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSN+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
        TSQ QSSPST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKT+   
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA
        ENESLCSTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPK+VES EKTIEPMIEPPAPV  DANPL+
Subjt:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA

Query:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDE
        N+A IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPNALPGLH+PPEPIQVRHVQLDILDQDDDSSDY SDE
Subjt:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

5.1e-208

94.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
         SQ QSSPSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVKTKD  
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA
        EN+SLCSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPK+VES EKTIEPMIEPPAPV TDANPLA
Subjt:  ENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLA

Query:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD
        NLA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLRPNALPGLH+PPEPIQVR VQLDILDQDDDSSDY SD
Subjt:  NLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

4.5e-204

94.61

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
         SQ QS+PSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT D  
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPL
        ENESLCS TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY FADLDVGLPKSVES EKTIEPMIE PAPV TDANPL
Subjt:  ENESLCS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPL

Query:  ANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR NALPGLHRP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A6J1I9F9 Mediator of RNA polymerase II transcription subunit 4

1.7e-203

94.36

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPS QNPTPPKLPPSQQSHHQ QSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFL

Query:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG
         SQ QS+PSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT D  
Subjt:  TSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAG

Query:  ENESLCS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPL
        ENESLCS TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVES EKTIEPMIE PAPV TDANPL
Subjt:  ENESLCS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPL

Query:  ANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR NALPGLHRP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASD

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

7.1e-05

29.19

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Query:  LTSQAQSSPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLD---------------
        L SQ       P+D  S  +T   +L L N L    ++++  + +L++   +Q    +I  EI  KD  +   A  LKD E  L+               
Subjt:  LTSQAQSSPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLD---------------

Query:  ---VLFDDYADYQRPRRVKTKDAGENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQL-----------YN
           ++ +   D ++P      DA   +++ +  V+ +    D++SYAHKIS TT AP  FG    APL     PPAPQ+E MR+S L           Y 
Subjt:  ---VLFDDYADYQRPRRVKTKDAGENESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQL-----------YN

Query:  FADLDVGLP
         A++DV  P
Subjt:  FADLDVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

8.3e-139

65.21

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q Q NL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDAGEN----ESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKS
        D+L DDY+DY++P+R K ++  E+     S  STTV+SQLKL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FADLD+GLPK+
Subjt:  DVLFDDYADYQRPRRVKTKDAGEN----ESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKS

Query:  VESNEKTIEPMIEPPAPVSTDANPLANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHRP
        VE+ EK +E +IEPP P         +++ I  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+   R ++ Q +RP+   GLHRP
Subjt:  VESNEKTIEPMIEPPAPVSTDANPLANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHRP

Query:  PEPIQVRHVQLDILDQDDDSSDYASDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYASDEGSSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

5.9e-140

65.21

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS H   Q Q NL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQSNL--------------SSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRSLWLTAFRGSLPTFLTSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL
        F+VSPNR++WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI++KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRSLWLTAFRGSLPTFLTSQAQSSPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPRRVKTKDAGEN----ESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKS
        D+L DDY+DY++P+R K ++  E+     S  STTV+SQLKL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FADLD+GLPK+
Subjt:  DVLFDDYADYQRPRRVKTKDAGEN----ESLCSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKS

Query:  VESNEKTIEPMIEPPAPVSTDANPLANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHRP
        VE+ EK +E +IEPP P         +++ I  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+   R ++ Q +RP+   GLHRP
Subjt:  VESNEKTIEPMIEPPAPVSTDANPLANLAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNALPGLHRP

Query:  PEPIQVRHVQLDILDQDDDSSDYASDEGSSEDDD
        P+ IQVR VQLDIL +DDDSSDY+SD+ SS+D+D
Subjt:  PEPIQVRHVQLDILDQDDDSSDYASDEGSSEDDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTCAGCATCAAATTGTTCAGTCCCCAGCTAGATTGGGCTTGACGAATCCCAATTCTCCCTCAATTCAAAACCCTACCCCTCCCAAATTGCCCCCCTCTCAACAATC
CCATCACCAAAATCAATCCAATCTCTCTTCTCCGACCCCTTCATCCACTCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTT
TAGCTTCCAAGCTCTTCGAAGTCTCCCCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTCCTTACTTCTCAAGCACAGTCGTCTCCCTCTACG
CCTCTCGATTCTACTCCGTCTACTTCGAAAGAAATTCTGTCTCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCA
AGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTTAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATG
ATTATGCGGATTATCAGCGTCCTCGACGGGTTAAAACGAAGGATGCTGGTGAAAATGAGTCTTTGTGTTCGACTACGGTTGCATCCCAGTTGAAATTATCTGATATATTG
TCGTATGCTCATAAGATAAGCTATACTACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCATTACGTGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAATGCG
TGCATCCCAGTTGTATAATTTTGCGGATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGCAATGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCAGTTTCAA
CAGATGCCAATCCTCTTGCTAATTTGGCTGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAACCTGGAATGCCTGTGGAATTACCAAGAGAT
TTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCT
TCCGGGATTACACAGACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACGCTAGTGATGAAGGTAGCTCTG
AAGATGATGATTGA

mRNA sequence

Show/hide mRNA sequence

AGAAAACATAGAGATATCAGTTTGCAAAATAGAATCGAACCGCCGGCTCAGCGGCGCCGAATCGCCGATCTTCTTCTTCCCTCGTCCTCAGGTTCTCTCAATTCCTATAA
TTGTCTTTGAAGTTTCAGATTGTTATTTTTCTGTTTTTCTCTATGAATTAAACCCTAATACGATCTCCATTGAAGCACACAACAATGCTTCAGCATCAAATTGTTCAGTC
CCCAGCTAGATTGGGCTTGACGAATCCCAATTCTCCCTCAATTCAAAACCCTACCCCTCCCAAATTGCCCCCCTCTCAACAATCCCATCACCAAAATCAATCCAATCTCT
CTTCTCCGACCCCTTCATCCACTCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTTTAGCTTCCAAGCTCTTCGAAGTCTCC
CCCAATCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTCCTTACTTCTCAAGCACAGTCGTCTCCCTCTACGCCTCTCGATTCTACTCCGTCTACTTC
GAAAGAAATTCTGTCTCTGTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCTAAGCAGAAGATTGCTTATG
AGATACGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTTAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCAGCGTCCTCGA
CGGGTTAAAACGAAGGATGCTGGTGAAAATGAGTCTTTGTGTTCGACTACGGTTGCATCCCAGTTGAAATTATCTGATATATTGTCGTATGCTCATAAGATAAGCTATAC
TACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCATTACGTGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAATGCGTGCATCCCAGTTGTATAATTTTGCGG
ATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGCAATGAGAAAACTATTGAGCCAATGATTGAGCCTCCAGCTCCAGTTTCAACAGATGCCAATCCTCTTGCTAATTTG
GCTGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAACCTGGAATGCCTGTGGAATTACCAAGAGATTTACCAATGCCCCCTCCTGGATGGAA
GCCTGGGGACCCTGTGCCATTACCCCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCGGGATTACACAGACCTCCTGAGC
CAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGATGATGATAGTAGTGATTACGCTAGTGATGAAGGTAGCTCTGAAGATGATGATTGAAGGAATCACCCT
GGATCGCCAACTAAGGCGGCTAAATGACCGCGTAGTGACAAAAAGAGGCATGGTTGTAGAGATAATCAAAACGTCGCTAGTTTGCCTAGAAGCTGCAACCCTTAAAGATT
GTGTAATAGTTCACTGATCACCGAATATGAATGAGGATAAATGATCTGCCGGAGCAAAGGTTACATTTCATACTTTCAAGCTTACATGTTCCTGATGATTTGTTTTGCAT
TCACAGGGTCAACATGAAACACGCAAATCTTGGCAACTTTTTCATTTGAAAAGCTGTAACTTTCCTGACTTGAGTTAATCAAACACGCAAATCTTGTCTTACACATGGTT
CCTTTGTTTTGAATGTGAGCTTAATCAAACTCTCTTAGGATACCGGACGCATTTGAGACCTGAGTAAAGAGTGTCCTAACTGTAATACCATGTCGTAGAGTGTGTGGTTA
ATAAGCTTCTACAGGCTGTTGAACATTATTGACTCAGTATCATTAGTTGAAGGAAATTGATTTGATTA

Protein sequence

Show/hide protein sequence

MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQAQSSPST
PLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDAGENESLCSTTVASQLKLSDIL
SYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKSVESNEKTIEPMIEPPAPVSTDANPLANLAGIQGLLPPNITVPSGWKPGMPVELPRD
LPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNALPGLHRPPEPIQVRHVQLDILDQDDDSSDYASDEGSSEDDD

Tan0011678 (gene) of Snake gourd v1 genome