CuGenDBv2

Gene ID	Tan0011684
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S2, chloroplastic
Genome location	LG09:40024046..40024537
RNA-Seq Expression	Tan0011684
Synteny	Tan0011684
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001865 - Ribosomal protein S2 IPR002128 - NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal IPR005706 - Ribosomal protein S2, bacteria/mitochondria/plastid IPR018130 - Ribosomal protein S2, conserved site IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009236269.1 ribosomal protein S2 [Gynostemma pentaphyllum]

4.4e-48

85.59

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

YP_009430616.1 ribosomal protein S2 [Gynostemma cardiospermum]

4.4e-48

85.59

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

YP_009752232.1 ribosomal protein S2 [Trichosanthes baviensis]

4.4e-48

85.59

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

YP_009752485.1 ribosomal protein S2 [Trichosanthes tubiflora]

2.4e-49

86.44

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

YP_009753163.1 ribosomal protein S2 [Trichosanthes truncata]

4.4e-48

85.59

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

TrEMBL top hits

e value

%identity

Alignment

A0A109WWM8 30S ribosomal protein S2, chloroplastic

2.1e-48

85.59

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

A0A1P8LE54 Ribosomal protein S2

2.1e-48

85.59

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

A0A6H0ERG8 30S ribosomal protein S2, chloroplastic

1.1e-49

86.44

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

A0A6H0EU20 30S ribosomal protein S2, chloroplastic

1.1e-49

86.44

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

A0A6M3RTZ2 30S ribosomal protein S2, chloroplastic

2.1e-48

85.59

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAATRARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

SwissProt top hits

e value

%identity

Alignment

Q09MI9 30S ribosomal protein S2, chloroplastic

3.5e-48

81.36

Show/hide

Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        M RRYWNIHLEEMMEAG+HFGHGTRKWNPRMAPYISAK KGIHI NLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAAD VARAA RARCHYV  NQ
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

Q0G9N0 30S ribosomal protein S2, chloroplastic

3.5e-48

81.36

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLV DAASRGK FL+VGTKNKAADSVA AA RARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

Q0ZJ31 30S ribosomal protein S2, chloroplastic

3.5e-48

94.85

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVN
        MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAA +ARCHYVN
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVN

Q49L09 30S ribosomal protein S2, chloroplastic

1.6e-48

82.2

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDLV DAASRGKQFLIVGTKNKAADSVARAA RARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

Q4VZP4 30S ribosomal protein S2, chloroplastic

3.8e-50

83.9

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAA+RGKQFLIVGTKNKAADSVARAATR RCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00160.1 ribosomal protein S2

2.8e-48

80.51

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ
        MT+RYWNI LEEMM AGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLV DAASRGKQFLIVGTKNKAAD V+RAA RARCHYV  N+
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQ

Query:  EAIGLNILDKWLITSLNL
        + +G  +L  W  T   L
Subjt:  EAIGLNILDKWLITSLNL

ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein

2.1e-08

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Query:  NQEAIGLNILDKWLITSLNLLYESSKDSENRYEFVKNATFYVSIAFFEILIAFSSISP
        NQE I  +IL K+   S+NLL+++S++  + YEF++NATF VSIAFF I IA+    P
Subjt:  NQEAIGLNILDKWLITSLNLLYESSKDSENRYEFVKNATFYVSIAFFEILIAFSSISP

Sequences

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CDS sequence

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ATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGC
AAAACGTAAAGGTATTCATATTATAAATCTTACTCGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTGTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTG
TTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAACAATCAAGAAGCAATTGGTTTGAATATATTAGACAAA
TGGTTAATTACATCTCTAAACTTGTTATATGAAAGTTCAAAAGATTCAGAAAATAGGTATGAATTTGTTAAAAATGCAACTTTTTATGTGAGTATAGCCTTTTTCGAAAT
ACTTATAGCATTTTCTTCTATAAGCCCACTTATTCATCTTTACAAAATTTGA

mRNA sequence

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Protein sequence

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MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVCDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNNNQEAIGLNILDK
WLITSLNLLYESSKDSENRYEFVKNATFYVSIAFFEILIAFSSISPLIHLYKI

Tan0011684 (gene) of Snake gourd v1 genome