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Tan0011692 (gene) of Snake gourd v1 genome

Gene IDTan0011692
OrganismTrichosanthes anguina (Snake gourd v1)
Description60S Acidic ribosomal protein
Genome locationLG05:1114159..1115269
RNA-Seq ExpressionTan0011692
SyntenyTan0011692
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]5.1e-4389.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGREKLASVPSGGGAV + APAGG+AG  AAPA AE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]5.1e-4389.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGREKLASVPSGGGAV + APAGG+AG  AAPA AE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

XP_022944125.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]1.1e-4289.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGREKLASVPSGGGAV + APAGG AG  AAPA AE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]1.5e-4288.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGREKLASVPSGGGAV + APAGG+AG  AAPA  E+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

XP_023512871.1 60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]4.3e-4288.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGREKLASVPSGGGAV + APAGG+AG  AA A AE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

TrEMBL top hitse value%identityAlignment
A0A1S3C8T5 60S acidic ribosomal protein P2B-like4.4e-4083.48Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+DE+ I  LLS+VKGKD+TELIASGREKLASVPSGGGA+AV A AGG+AG  AAPAPAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

A0A5A7SR49 60S acidic ribosomal protein P2B-like4.4e-4083.48Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+DE+ I  LLS+VKGKD+TELIASGREKLASVPSGGGA+AV A AGG+AG  AAPAPAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

A0A6J1DJB9 60S acidic ribosomal protein P2B-like2.1e-4291.3Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDED I SLLSQVKGKDITELIASGREKLASVPSGGGAVAV APAGG+AG  AAPA AEEKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKEDSDDDLGFSLFD
Subjt:  EKEDSDDDLGFSLFD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like5.5e-4389.57Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGREKLASVPSGGGAV + APAGG AG  AAPA AE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like7.2e-4388.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDED I SLLSQVKGKDITELIASGREKLASVPSGGGAV + APAGG+AG  AAPA  E+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAV-APAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEDSDDDLGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B1.2e-3168.42Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEE
        MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE DE+ +  LL+++K KDITE+IA+GRE+L+SVPSGGGA+ +      AG  AAPA  E KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEE

Query:  KEDSDDDLGFSLFD
        KE+SD+D+GFSLFD
Subjt:  KEDSDDDLGFSLFD

P41099 60S acidic ribosomal protein P21.4e-3069.3Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEE
        MKV+AA+LLA+LGGNTSP  +D+K IL SVGA+ D+D I  LLSQVKGKDITELIASGRE+LASVPSGGG    A AGG  G A A A  E KKEEK E 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEE

Query:  KEDSDDDLGFSLFD
         E+SD++LGFSLFD
Subjt:  KEDSDDDLGFSLFD

P46252 60S acidic ribosomal protein P2A4.7e-3171.93Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEE
        MK VAAYLLAVL GN SP  DD+  IL SVG EVD + +  LLSQ+ GKDITELIA+GREK ASVP GGG VAVA A  +AG  AAPA AE KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEE

Query:  KEDSDDDLGFSLFD
        KE+SDDD+GFSLFD
Subjt:  KEDSDDDLGFSLFD

Q9LXM8 60S acidic ribosomal protein P2-42.2e-2866.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVE
        MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I  LL +V GKDI ELIASGREKLASVPSGGG AV+ AP+ G  G AAAPA   EKKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLF+
Subjt:  EKEDSDDDLGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-23.7e-2865.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++  I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA A    G     + AE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLF+
Subjt:  EKEDSDDDLGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family2.6e-2965.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++  I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA A    G     + AE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLF+
Subjt:  EKEDSDDDLGFSLFD

AT2G27710.2 60S acidic ribosomal protein family2.6e-2965.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++  I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA A    G     + AE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLF+
Subjt:  EKEDSDDDLGFSLFD

AT2G27710.3 60S acidic ribosomal protein family2.6e-2965.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++  I  LL +VKGKD+ ELIA+GREKLASVPS GGG VAVA A    G     + AE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPS-GGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLF+
Subjt:  EKEDSDDDLGFSLFD

AT3G44590.1 60S acidic ribosomal protein family1.5e-2966.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVE
        MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I  LL +V GKDI ELIASGREKLASVPSGGG AV+ AP+ G  G AAAPA   EKKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLF+
Subjt:  EKEDSDDDLGFSLFD

AT3G44590.2 60S acidic ribosomal protein family1.5e-2966.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVE
        MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I  LL +V GKDI ELIASGREKLASVPSGGG AV+ AP+ G  G AAAPA   EKKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGG-AVAVAPAGGSAGSAAAPAPAEEKKEEKVE

Query:  EKEDSDDDLGFSLFD
        EKE+SDDD+GFSLF+
Subjt:  EKEDSDDDLGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTTGGTGGCAACACGAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTCGGGGCTGAGGTAGACGAGGA
CATGATCGGCTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACGGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTACCGTCTGGCGGAGGTGCAGTCGCCG
TCGCCCCTGCTGGTGGTTCCGCTGGTAGTGCTGCAGCACCAGCCCCAGCGGAGGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGATTCCGACGATGACTTGGGCTTC
AGCCTCTTTGACTGA
mRNA sequenceShow/hide mRNA sequence
TTGACCGACGGCTTCGATCTCTCTCCCTCTTGGTTGCAGCTTCTGTTTCGAAGTTCTCAAAGATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTTGGTGGCAACACG
AGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTCGGGGCTGAGGTAGACGAGGACATGATCGGCTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACGGA
GTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTACCGTCTGGCGGAGGTGCAGTCGCCGTCGCCCCTGCTGGTGGTTCCGCTGGTAGTGCTGCAGCACCAGCCCCAG
CGGAGGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGATTCCGACGATGACTTGGGCTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTTATCAGTTAGTGT
TTTAGTTAAATTTCGTTCAAGTTTCCGGTCTGTGGTAGCTTGGTAGGGTTTTTCTCTTTAAACTTATTGGAACTCAAAAATTTTGATAGATGAAAGTGCAATTTTCTATT
TCAACATTTCAGTGATTACTGTCATATTTGAGTTTTGTGATTTATGATTTCCAATGTTTCTCATCTTATCATGCATGATCAATTTTGGTATTGCAAATTCCC
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDMIGSLLSQVKGKDITELIASGREKLASVPSGGGAVAVAPAGGSAGSAAAPAPAEEKKEEKVEEKEDSDDDLGF
SLFD