CuGenDBv2

Gene ID	Tan0011783
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribosomal protein S12
Genome location	Contig00124:200497..200874
RNA-Seq Expression	Tan0011783
Synteny	Tan0011783
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR005679 - Ribosomal protein S12, bacterial-type IPR006032 - Ribosomal protein S12/S23 IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QNJ89401.1 ribosomal protein S12 [Oenanthe virgata]

3.7e-63

99.2

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

QWX88123.1 ribosomal protein S12 [Indigofera tinctoria]

4.9e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKD PGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

XP_023545340.1 uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]

2.2e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

YP_004849331.1 ribosomal protein S12 [Cucumis sativus]

4.9e-63

98.4

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

YP_009709935.1 ribosomal protein S12 [Manihot esculenta]

9.8e-64

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

TrEMBL top hits

e value

%identity

Alignment

A0A5J6Y1K8 Ribosomal protein S12

4.8e-64

100

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

A0A7D6BYE6 Ribosomal protein S12

4.8e-64

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

A0A7G8P5I5 Ribosomal protein S12

1.8e-63

99.2

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

G3EIY3 Ribosomal protein S12

2.4e-63

98.4

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

W6JLR7 Ribosomal protein S12

4.8e-64

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

SwissProt top hits

e value

%identity

Alignment

P27070 Ribosomal protein S12, mitochondrial

2.1e-64

96.8

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRL+NRHDIF HIPGEGHN QEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P60096 Ribosomal protein S12, mitochondrial

1.9e-62

95.2

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEH MVLIRGGRVKDSPGVKSH IRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIP+RRRGRSKYGAE+PKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P68535 Ribosomal protein S12, mitochondrial

1.6e-64

97.6

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P68536 Ribosomal protein S12, mitochondrial

1.6e-64

97.6

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Q95869 Ribosomal protein S12, mitochondrial

6.6e-63

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDSPGVK HCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07675.1 Ribosomal protein S12/S23 family protein

4.4e-62

92.8

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDL+GIP RRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

ATCG00065.1 ribosomal protein S12A

3.5e-35

58.54

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG00905.1 ribosomal protein S12C

3.5e-35

58.54

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG01230.1 ribosomal protein S12B

3.5e-35

58.54

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATMG00980.1 Ribosomal protein S12/S23 family protein

4.4e-62

92.8

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDL+GIP RRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGT
TTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATT
TGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGA
AGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATCGATATGA

mRNA sequence

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Protein sequence

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MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDR
RRGRSKYGAEKPKSI

Tan0011783 (gene) of Snake gourd v1 genome