CuGenDBv2

Gene ID	Tan0011818
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ribosomal protein L16
Genome location	LG02:59888941..59889474
RNA-Seq Expression	Tan0011818
Synteny	Tan0011818
Gene Ontology terms	GO:0032543 - mitochondrial translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000114 - Ribosomal protein L16 IPR016180 - Ribosomal protein L10e/L16 IPR036920 - Ribosomal protein L10e/L16 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QHD18539.1 ribosomal protein L16 [Xanthoceras sorbifolium]

5.8e-32

77.14

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Query:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS
        R SYRAIEA      R I   + R +S    RNGKIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS
Subjt:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS

Query:  TKFVQ
        TKFVQ
Subjt:  TKFVQ

QKS75109.1 ribosomal protein L16 [Campynemanthe viridiflora]

5.8e-32

54.24

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Query:  MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MY  +KSIML              CGS    I  DVLYP         K             L       K     R SYRAIEA               
Subjt:  MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
           RNGKIWVRVLADLPITG  + V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Subjt:  TISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

YP_004237269.1 ribosomal protein L16 [Ricinus communis]

5.8e-32

77.14

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Query:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS
        R SYRAIEA      R I   + R +S    RNGKIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS
Subjt:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS

Query:  TKFVQ
        TKFVQ
Subjt:  TKFVQ

YP_009412589.1 ribosomal protein L16 [Hibiscus cannabinus]

5.8e-32

54.7

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Query:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT KSIML              CG +      DVLYP         K             L       K  +  R SYRAIEA      R I   + R
Subjt:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
         +S    RNGKIWVRVLADLPITG    V MGRGKGNPTGWI+RVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Subjt:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

YP_009498093.1 ribosomal protein L16 [Bombax ceiba]

2.6e-32

55.25

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Query:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT KSIML              CG +      DVLYP         K             L       K  +  R SYRAIEA      R I   + R
Subjt:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
         +S    RNGKIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Subjt:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

TrEMBL top hits

e value

%identity

Alignment

A0A1C9I9R6 Ribosomal protein L16

2.8e-32

55.25

Show/hide

Query:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT KSIML              CG +      DVLYP         K             L       K  +  R SYRAIEA      R I   + R
Subjt:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
         +S    RNGKIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Subjt:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

A0A220T1I5 Ribosomal protein L16

2.8e-32

54.7

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Query:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT KSIML              CG +      DVLYP         K             L       K  +  R SYRAIEA      R I   + R
Subjt:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
         +S    RNGKIWVRVLADLPITG    V MGRGKGNPTGWI+RVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Subjt:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

A0A344A016 Ribosomal protein L16

1.3e-32

55.25

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Query:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT KSIML              CG +      DVLYP         K             L       K  +  R SYRAIEA      R I   + R
Subjt:  MYLTVKSIML--------------CGSIY----SDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
         +S    RNGKIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Subjt:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

A0A7G3V4T4 Ribosomal protein L16

2.8e-32

54.24

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Query:  MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MY  +KSIML              CGS    I  DVLYP         K             L       K     R SYRAIEA               
Subjt:  MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
           RNGKIWVRVLADLPITG  + V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
Subjt:  TISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

A0A7H1CQU0 Ribosomal protein L16

2.8e-32

77.14

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Query:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS
        R SYRAIEA      R I   + R +S    RNGKIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS
Subjt:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS

Query:  TKFVQ
        TKFVQ
Subjt:  TKFVQ

SwissProt top hits

e value

%identity

Alignment

P27927 60S ribosomal protein L16, mitochondrial

1.9e-33

54.24

Show/hide

Query:  MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT KSIML              CGS    I  DVLYP         K             L       K     R SYRAIEA               
Subjt:  MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
           RN KIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAA LAAHKPCSSTKFVQ
Subjt:  TISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

P46801 60S ribosomal protein L16, mitochondrial

1.1e-33

54.24

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Query:  MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT KSIML              CGS    I  DVLYP         K             L       K     R SYRAIEA               
Subjt:  MYLTVKSIML--------------CGS----IYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
           RN KIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAA LAAHKPCSSTKFVQ
Subjt:  TISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

P49389 60S ribosomal protein L16, mitochondrial

7.1e-33

74.29

Show/hide

Query:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS
        R SYRAIEA       TI   + R +S    RN KIWVRVLADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSL+NARQAA LAAHKPCSS
Subjt:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSS

Query:  TKFVQ
        TKFVQ
Subjt:  TKFVQ

Q04715 60S ribosomal protein L16, mitochondrial

2.3e-23

69.66

Show/hide

Query:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQA
        R SYRAIEA      R I   + R +S    RNGKIWVRVLAD+PITG    V MGRGKGNPTGWIARVS GQI FEMDGVSLSNARQA
Subjt:  RHSYRAIEAVASGYNRTIPSCYERTIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQA

Q95747 60S ribosomal protein L16, mitochondrial

5.1e-31

51.93

Show/hide

Query:  MYLTVKSIML--------------CG----SIYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT+KSIML              CG        DVLYP         K             L      +K  +    SYRAIEA      R I   + R
Subjt:  MYLTVKSIML--------------CG----SIYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
         +S    RNGKIWVRV ADLPITG    V MGRGKGNPTGWIARVSTGQI FEMDGVSL+NARQAATLAAHK C STKFVQ
Subjt:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

6.6e-10

44.16

Show/hide

Query:  RTISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV
        R I R   + V + AD P+T       MGRGKG P  W+A V  G+I +EM GVS   AR+A ++AA K  + TKF+
Subjt:  RTISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV

ATCG00790.1 ribosomal protein L16

9.3e-12

44.16

Show/hide

Query:  RTISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV
        R + R GKIWVR+  D P+T       MG GKG+P  W+A V  G+I +EM GV  + AR+A ++AA K    T+F+
Subjt:  RTISRNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFV

ATMG00080.1 ribosomal protein L16

9.2e-36

54.14

Show/hide

Query:  MYLTVKSIML--------------CG----SIYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER
        MYLT+KSIML              CG        DVLYP         K             L       K  +  R SYRAIEA      R I   + R
Subjt:  MYLTVKSIML--------------CG----SIYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYER

Query:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ
         +S    RNGKIWVRV ADLPITG    V MGRGKGNPTGWIARVSTGQIPFEMDGVSL+NARQAATLAAHKPCSSTKFVQ
Subjt:  TIS----RNGKIWVRVLADLPITGN-LRVEMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTATTTAACCGTAAAATCGATTATGCTCTGCGGAAGTATCTACTCGGACGTGTTATATCCAAACGTAAGAAATATAGTAAATATCGTAAAGGCGGATGTAGTAGGGGT
TGCAAACCTGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTCGAAAGGTGTCGTCATTCATATCGAGCCATTGAAGCGGTAGCGTCGGGCTATAATC
GGACAATTCCATCGTGCTATGAGCGGACAATTTCAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTACCGGAAACCTACGTGTCGAAATGGGGCGA
GGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACTGGACAAATCCCATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGC
GCATAAACCATGTTCGTCAACCAAGTTTGTTCAAGTGGTCGTAACGTAA

mRNA sequence

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Protein sequence

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MYLTVKSIMLCGSIYSDVLYPNVRNIVNIVKADVVGVANLTVHNLVLEDMALKVVERCRHSYRAIEAVASGYNRTIPSCYERTISRNGKIWVRVLADLPITGNLRVEMGR
GKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQVVVT

Tan0011818 (gene) of Snake gourd v1 genome