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Tan0011850 (gene) of Snake gourd v1 genome

Gene IDTan0011850
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionArabinogalactan peptide 23-like
Genome locationLG03:42083672..42083860
RNA-Seq ExpressionTan0011850
SyntenyTan0011850
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]1.2e-1482.26Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
        MEMK  A +AF+ V ASLSMVLAS+EAA+PAPGPSSG SATLPVVGTLLGASAASL+AYCLQ
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]1.1e-1285.71Show/hide
Query:  AVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
        A +AF+ VAASLSMVLAS+EAA+PAPGPSS ASATLPVVGTLLGASAASL+AYCLQ
Subjt:  AVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
KAG6603249.1 Fructokinase-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.2e-0773.08Show/hide
Query:  VVVAASLSMVLASNEAAAPAPGPSS-GASATLPVVGTLLGASAASLVAYCLQ
        +  AASL+M LAS E AAPAPGPSS  A+AT+PVVGTLLGAS ASL+A+CLQ
Subjt:  VVVAASLSMVLASNEAAAPAPGPSS-GASATLPVVGTLLGASAASLVAYCLQ
PON58107.1 hypothetical protein PanWU01x14_168770 [Parasponia andersonii]8.5e-0868.85Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
        ME+KKI+ +A +V AASLS V+A+NE  APAPGPSSGASATLPVVG+L+GAS  S  AY L
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]6.5e-0868.85Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
        ME+KKI++ A +V AASLS V+A+NE  APAPGPSSGASATLPVVG+L+GAS  S  AY L
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)7.7e-0764.52Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
        M+MKKI+  A +V AAS+S VLAS+++ APAPGPSSGASA LPV G+L+GAS  S  AY LQ
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
A0A2K1ZXB0 Uncharacterized protein5.9e-0764.52Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
        ME+KKI+  A +VVAAS+S  LA++E +APAP P+SGASATLPVVG+L+GAS  S  AY LQ
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
A0A2P5CAP7 Uncharacterized protein4.1e-0868.85Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
        ME+KKI+ +A +V AASLS V+A+NE  APAPGPSSGASATLPVVG+L+GAS  S  AY L
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
A0A2P5F1L3 Uncharacterized protein3.1e-0868.85Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
        ME+KKI++ A +V AASLS V+A+NE  APAPGPSSGASATLPVVG+L+GAS  S  AY L
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
A0A5D3E271 Arabinogalactan peptide 23-like5.9e-1582.26Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
        MEMK  A +AF+ V ASLSMVLAS+EAA+PAPGPSSG SATLPVVGTLLGASAASL+AYCLQ
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 232.2e-0655.74Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
        MEMKKIA    +  AAS++ V+A+ E  APAPGP+S ASA LP +G+L+GAS  SL +Y L
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)3.2e-0556.45Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGP-SSGASATLPVVGTLLGASAASLVAYCL
        MEMKKIA    V  AAS++ V+A+ E  APAPGP +SGAS  +P +G+L+GAS  SL AY L
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGP-SSGASATLPVVGTLLGASAASLVAYCL
AT3G57690.1 arabinogalactan protein 231.5e-0755.74Show/hide
Query:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL
        MEMKKIA    +  AAS++ V+A+ E  APAPGP+S ASA LP +G+L+GAS  SL +Y L
Subjt:  MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGATCGCCGTTTCAGCCTTCGTCGTCGTTGCTGCCTCCCTGAGCATGGTTTTGGCCTCCAACGAAGCAGCAGCACCGGCACCTGGCCCGTCCAGCGG
TGCTTCTGCTACCTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTTGTTGCATACTGCCTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGATCGCCGTTTCAGCCTTCGTCGTCGTTGCTGCCTCCCTGAGCATGGTTTTGGCCTCCAACGAAGCAGCAGCACCGGCACCTGGCCCGTCCAGCGG
TGCTTCTGCTACCTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTTGTTGCATACTGCCTTCAGTAA
Protein sequenceShow/hide protein sequence
MEMKKIAVSAFVVVAASLSMVLASNEAAAPAPGPSSGASATLPVVGTLLGASAASLVAYCLQ