CuGenDBv2

Gene ID	Tan0011858
Organism	Trichosanthes anguina (Snake gourd v1)
Description	light-regulated protein-like
Genome location	LG06:19317225..19317851
RNA-Seq Expression	Tan0011858
Synteny	Tan0011858
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR009856 - Light regulated Lir1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

NP_001267523.1 light-regulated protein-like [Cucumis sativus]

5.5e-58

83.33

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQ QAALS+A P SCSL PPT KSMAFSIPTRS+ R        + TL+ KASAVGQDPSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        G SV+EPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_022953556.1 light-regulated protein-like [Cucurbita moschata]

7.4e-63

88.89

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQLQAA SLA PSSC L PPTTK MAFSIP+RS+RRH PTSQT R  L+ KASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GGSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_022991991.1 light-regulated protein, chloroplastic-like [Cucurbita maxima]

5.6e-63

88.19

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQLQAA SLA PSSC L PPTTK MAFS+P+RS+RRH PTSQT R  L+ KASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GGSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_023547464.1 light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.3e-62

88.89

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQLQAA SLA PSSC L PPTTK MAFSIP+RS RRH PTSQT R  L+ KASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GGSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_038906788.1 light-regulated protein, chloroplastic-like [Benincasa hispida]

2.5e-63

88.89

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQLQAALS+A PSSCSL PPT KSMAFS+ +RS+ RH PTSQTQR  L+ KASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         GSV+EPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CBQ8 light-regulated protein-like

1.0e-57

83.33

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQLQAALS+APP SCSL PPT K MAFSI TRSL R        + TL+ KASAVGQ+PSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        G SV+EPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A5D3DLY7 Light-regulated protein-like

7.7e-58

83.33

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQLQAALS+APP SCSL PPT K MAFSI TRSL R        + TL+ KASAVGQ+PSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        G SV+EPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1GNA5 light-regulated protein-like

3.6e-63

88.89

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQLQAA SLA PSSC L PPTTK MAFSIP+RS+RRH PTSQT R  L+ KASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GGSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1JSC1 light-regulated protein, chloroplastic-like

2.7e-63

88.19

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQLQAA SLA PSSC L PPTTK MAFS+P+RS+RRH PTSQT R  L+ KASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GGSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Q39636 CR9 protein

2.6e-58

83.33

Show/hide

Query:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
        MQ QAALS+A P SCSL PPT KSMAFSIPTRS+ R        + TL+ KASAVGQDPSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK
Subjt:  MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK

Query:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        G SV+EPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GGSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

SwissProt top hits

e value

%identity

Alignment

Q03200 Light-regulated protein, chloroplastic

5.9e-23

53.64

Show/hide

Query:  SIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGS--VSEPVDREYLQYDSPKTVFPAE
        ++  RSL+   P     R  ++  A+AV  + + VDYSS  SVFP EACD +GGEAC+V+MYPE KL   A    S   +E VDR+YL YD P TVFP E
Subjt:  SIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGS--VSEPVDREYLQYDSPKTVFPAE

Query:  ACDDLGGEFC
        ACDDLGGEFC
Subjt:  ACDDLGGEFC

Q96500 Light-regulated protein 1, chloroplastic

2.2e-25

49.63

Show/hide

Query:  SLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVSE
        S++ P    L P  TK+   S    SLR +  +S          +S++  DP+TVDY SSI SVFPAEAC+ + G AC  ++YPEVKL  +       SE
Subjt:  SLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVSE

Query:  PVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
        PVDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  PVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G26740.1 CCR-like

1.5e-26

49.63

Show/hide

Query:  SLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVSE
        S++ P    L P  TK+   S    SLR +  +S          +S++  DP+TVDY SSI SVFPAEAC+ + G AC  ++YPEVKL  +       SE
Subjt:  SLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVSE

Query:  PVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
        PVDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  PVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAATTGCAGGCAGCTCTTTCCTTGGCACCTCCATCATCATGCTCCCTCTTCCCACCAACCACCAAATCAATGGCCTTCTCAATCCCTACTAGGTCCCTGCGAAGGCA
CCCTCCCACTTCTCAAACTCAACGTTCTACCCTACAGGTAAAGGCAAGTGCGGTTGGACAAGACCCTTCAACCGTTGACTATAGCTCCATCTCCTCAGTTTTTCCAGCTG
AGGCTTGTGACACTGTTGGAGGGGAAGCTTGTGATGTTGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAGAAAGGGGGTAGTGTTTCAGAGCCTGTTGATCGA
GAGTATCTACAATATGACAGTCCCAAGACAGTTTTTCCAGCGGAGGCTTGTGATGATTTGGGTGGTGAGTTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MQLQAALSLAPPSSCSLFPPTTKSMAFSIPTRSLRRHPPTSQTQRSTLQVKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVSEPVDR
EYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Tan0011858 (gene) of Snake gourd v1 genome