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Tan0011865 (gene) of Snake gourd v1 genome

Gene IDTan0011865
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG04:83122076..83122261
RNA-Seq ExpressionTan0011865
SyntenyTan0011865
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018086.1 hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-1486.44Show/hide
Query:  MKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MKKIACAVLFAAATVSA VAHDEALAPAPGPSS A+   PAIGS+IGASL+SVAAYYLQ
Subjt:  MKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
KAG7019275.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-1581.97Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEMKKI CA+LFAAATVSA VAHDEA APAPGP+S A+   PAIGSLIGASL+SVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
XP_022983304.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.1e-1586.89Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEMKKIACAVLFAAATVSA VAHDEALAPAPGPSS A+   PAIGS IGASL+SVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
XP_022998512.1 arabinogalactan peptide 23-like [Cucurbita maxima]3.5e-1480.33Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEM KI CA+LFAAATVSA VAHDEA APAPGP+S A+   PAIGSLIGASL+SVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
XP_038905644.1 arabinogalactan protein 23-like [Benincasa hispida]2.9e-1688.52Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSS A+   PAIGS+IGASL+SVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
TrEMBL top hitse value%identityAlignment
A0A5A7U280 Arabinogalactan peptide 234.9e-1481.67Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYL
        MEMKKIACA+LFAAATVSAAVA D+ALAPAPGPSS A+   PAIGSL+GASL+S AAYYL
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYL
A0A6J1F209 arabinogalactan peptide 23-like3.8e-1481.97Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEMKKI CAVLFAAATV+AAVA +EA APAPGP+SAA+   PAIGSLIGASL+SVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
A0A6J1HQG2 arabinogalactan peptide 23-like3.8e-1481.97Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEMKKI CAVLFAAATV+AAVA +EA APAPGP+SAA+   PAIGSLIGASL+SVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
A0A6J1J6Y9 arabinogalactan peptide 23-like5.3e-1686.89Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEMKKIACAVLFAAATVSA VAHDEALAPAPGPSS A+   PAIGS IGASL+SVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
A0A6J1K873 arabinogalactan peptide 23-like1.7e-1480.33Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEM KI CA+LFAAATVSA VAHDEA APAPGP+S A+   PAIGSLIGASL+SVAAYYLQ
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 231.2e-1266.67Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYL
        MEMKKIAC VLFAAA+++A +A +E  APAPGP+SAAS   PA+GSL+GASL+S+ +YYL
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)4.3e-1063.93Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGP-SSAASTVFPAIGSLIGASLISVAAYYL
        MEMKKIAC V+FAAA+++A +A  E  APAPGP +S AS   PA+GSL+GASL+S+ AYYL
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGP-SSAASTVFPAIGSLIGASLISVAAYYL
AT3G20865.1 arabinogalactan protein 407.8e-0445.16Show/hide
Query:  MEMKKIACAVLFAAATVSA-AVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
        MEMK I  A+  +A  VS+ + A  E+ AP+PG SSA++  FP +GS++ ASL +  A  LQ
Subjt:  MEMKKIACAVLFAAATVSA-AVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ
AT3G57690.1 arabinogalactan protein 238.3e-1466.67Show/hide
Query:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYL
        MEMKKIAC VLFAAA+++A +A +E  APAPGP+SAAS   PA+GSL+GASL+S+ +YYL
Subjt:  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGAAGAAGATCGCCTGTGCCGTCCTCTTCGCAGCCGCAACCGTCAGCGCGGCCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGCCGC
CTCCACCGTCTTCCCGGCAATCGGATCTCTCATCGGCGCTTCGTTGATCTCCGTCGCGGCCTACTACTTGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGAAGAAGATCGCCTGTGCCGTCCTCTTCGCAGCCGCAACCGTCAGCGCGGCCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGCCGC
CTCCACCGTCTTCCCGGCAATCGGATCTCTCATCGGCGCTTCGTTGATCTCCGTCGCGGCCTACTACTTGCAATGA
Protein sequenceShow/hide protein sequence
MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSAASTVFPAIGSLIGASLISVAAYYLQ