CuGenDBv2

Gene ID	Tan0011913
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L33, chloroplastic
Genome location	LG01:45306814..45307011
RNA-Seq Expression	Tan0011913
Synteny	Tan0011913
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001705 - Ribosomal protein L33 IPR011332 - Zinc-binding ribosomal protein IPR018264 - Ribosomal protein L33, conserved site IPR038584 - Ribosomal protein L33 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009317407.1 ribosomal protein L33 [Coccinia grandis]

1.0e-24

90.91

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN VN+ESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

YP_009456082.1 ribosomal protein L33 [Momordica charantia]

1.4e-24

89.39

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN VN+ESMG+SRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

YP_009751843.1 ribosomal protein L33 [Indofevillea khasiana]

8.0e-25

90.91

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN+VN+ESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

YP_009752264.1 ribosomal protein L33 [Trichosanthes baviensis]

4.7e-25

92.42

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN VNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

YP_009753895.1 ribosomal protein L33 [Trichosanthes lobata]

3.6e-25

93.94

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DARITVILECTR VRN VNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

TrEMBL top hits

e value

%identity

Alignment

A0A6H0EPE9 50S ribosomal protein L33, chloroplastic

2.3e-25

92.42

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN VNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

A0A6H0ESJ1 50S ribosomal protein L33, chloroplastic

2.3e-25

92.42

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN VNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

A0A6H0ET78 50S ribosomal protein L33, chloroplastic

3.9e-25

90.91

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN+VN+ESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

A0A6H0EV38 50S ribosomal protein L33, chloroplastic

1.7e-25

93.94

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DARITVILECTR VRN VNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

A0A6H0EVH4 50S ribosomal protein L33, chloroplastic

2.3e-25

92.42

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN VNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

SwissProt top hits

e value

%identity

Alignment

A0ZZ56 50S ribosomal protein L33, chloroplastic

1.1e-24

81.82

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +D R+T+ILECT  VRN VN+ES GISRYITQKNRHNTPSRLEL+KFCP CYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

B1A956 50S ribosomal protein L33, chloroplastic

2.9e-25

84.85

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+T+ILECT  VRN VN+ES GISRYITQKNRHNTPSRLELRKFCP CYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Q09WZ6 50S ribosomal protein L33, chloroplastic

8.3e-25

81.82

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+T+ILECT  +RN VN+ES GISRYITQKNRHNTPSRLELRKFCP CYKHTIHGE+KK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Q2L929 50S ribosomal protein L33, chloroplastic

1.1e-24

81.82

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +D R+T+ILECT  VRN VN+ES GISRYITQKNRHNTPSRLEL+KFCP CYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Q2QD68 50S ribosomal protein L33, chloroplastic

8.9e-27

87.88

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +DAR+TVILECTR VRN VN++S+GISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00640.1 ribosomal protein L33

6.5e-25

78.79

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Query:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAK +D R+T+ILECT  VRN++ +E+ GISRYITQKNRHNTPSRLELRKFCP CYKHTIHGEIKK
Subjt:  MAKCEDARITVILECTR-VRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Sequences

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CDS sequence

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ATGGCCAAGTGTGAAGATGCCCGAATAACAGTTATTTTGGAATGTACTCGTGTTCGAAACAATGTTAATAGGGAATCAATGGGTATTTCTAGATATATTACTCAAAAGAA
TCGACACAATACGCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCCGTTGTTACAAACATACGATTCATGGGGAGATAAAGAAATAG

mRNA sequence

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ATGGCCAAGTGTGAAGATGCCCGAATAACAGTTATTTTGGAATGTACTCGTGTTCGAAACAATGTTAATAGGGAATCAATGGGTATTTCTAGATATATTACTCAAAAGAA
TCGACACAATACGCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCCGTTGTTACAAACATACGATTCATGGGGAGATAAAGAAATAG

Protein sequence

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MAKCEDARITVILECTRVRNNVNRESMGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Tan0011913 (gene) of Snake gourd v1 genome