| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 4.5e-93 | 73.14 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLNG L+E+IYM QP+GFI Q QEQKVC L +SIYGLKQASRSWNIRFD AIKSYGF+QNVDEPCVYKKIVN+ VAFLILYVDDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+IV NR+N+TLAMSQASYIDK+LSRYKM+N KKG LPFRH +HLSK QCPKTPQEVEDMR I Y+SAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICY+VGIV+RYQSNP DHWT VK ILKYLRRTRN
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 1.1e-91 | 71.9 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLNG L+E+I+M QP+GFITQGQEQKVC L+RSIYGLKQASRSWNIRFD AIKSYGFDQNVDEPCVYKKI VAFL+LYVDDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+I+ +R+N+TLA+SQA+YIDK+L RY M+N KKGLLPFRH VHLSK Q PKTPQEVEDMRRI YASAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICYAVGIV+RYQSNP LDHWT VK +LKYLRRTR+
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa] | 8.5e-92 | 72.31 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLNG L+E+I+M QP+GFITQGQEQKVC L+RSIYGLKQASRSWNIRFD AIKSYGFDQNVDEPCVYKKI VAFL+LYVDDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+I+ +R+N+TLA+SQA+YIDK+L RY M+N KKGLLPFRH VHLSK Q PKTPQEVEDMRRI YASAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICYAVGIV+RYQSNP LDHWT VK ILKYLRRTR+
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa] | 1.1e-91 | 71.9 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLNG L+E+I+M QP+GFITQGQEQKVC L+RSIYGLKQASRSWNIRFD AIKSYGFDQNVDEPCVYKKI VAFL+LYVDDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+I+ +R+N+TLA+SQA+YIDK+L RY M+N KKGLLPFRH VHLSK Q PKTPQEVEDMRRI YASAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICYAVGIV+RYQSNP LDHWT VK +LKYLRRTR+
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| KAA0059556.1 gag/pol protein [Cucumis melo var. makuwa] | 1.9e-91 | 71.49 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLN L+E+I+M QP+GFITQGQEQKVC L+RSIYGLKQASRSWNIRFD AIK YGFDQNVDEPCVYKKI VAFL+LY+DDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+I+ +R+N+TLA+SQA+YIDKML RY M+N KKGLLPFRH VHLSK QCPKTPQEVEDMRRI YASAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICYAVGIV+RYQSNP LDHWT VK ILKYL+RTR+
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T2V9 Gag/pol protein | 4.1e-92 | 72.31 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLNG L+E+I+M QP+GFITQGQEQKVC L+RSIYGLKQASRSWNIRFD AIKSYGFDQNVDEPCVYKKI VAFL+LYVDDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+I+ +R+N+TLA+SQA+YIDK+L RY M+N KKGLLPFRH VHLSK Q PKTPQEVEDMRRI YASAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICYAVGIV+RYQSNP LDHWT VK ILKYLRRTR+
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| A0A5A7TZD0 Gag/pol protein | 5.4e-92 | 71.9 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLNG L+E+I+M QP+GFITQGQEQKVC L+RSIYGLKQASRSWNIRFD AIKSYGFDQNVDEPCVYKKI VAFL+LYVDDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+I+ +R+N+TLA+SQA+YIDK+L RY M+N KKGLLPFRH VHLSK Q PKTPQEVEDMRRI YASAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICYAVGIV+RYQSNP LDHWT VK +LKYLRRTR+
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| A0A5A7UYE8 Gag/pol protein | 5.4e-92 | 71.9 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLNG L+E+I+M QP+GFITQGQEQKVC L+RSIYGLKQASRSWNIRFD AIKSYGFDQNVDEPCVYKKI VAFL+LYVDDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+I+ +R+N+TLA+SQA+YIDK+L RY M+N KKGLLPFRH VHLSK Q PKTPQEVEDMRRI YASAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICYAVGIV+RYQSNP LDHWT VK +LKYLRRTR+
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| A0A5A7UZF3 Gag/pol protein | 9.2e-92 | 71.49 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLN L+E+I+M QP+GFITQGQEQKVC L+RSIYGLKQASRSWNIRFD AIK YGFDQNVDEPCVYKKI VAFL+LY+DDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+I+ +R+N+TLA+SQA+YIDKML RY M+N KKGLLPFRH VHLSK QCPKTPQEVEDMRRI YASAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICYAVGIV+RYQSNP LDHWT VK ILKYL+RTR+
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| E2GK51 Gag/pol protein (Fragment) | 2.2e-93 | 73.14 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
MDVKTAFLNG L+E+IYM QP+GFI Q QEQKVC L +SIYGLKQASRSWNIRFD AIKSYGF+QNVDEPCVYKKIVN+ VAFLILYVDDILLIG
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGK----
Query: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
+IV NR+N+TLAMSQASYIDK+LSRYKM+N KKG LPFRH +HLSK QCPKTPQEVEDMR I Y+SAVGSLMYA
Subjt: --------------------------EIVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYA
Query: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
MLCTRPDICY+VGIV+RYQSNP DHWT VK ILKYLRRTRN
Subjt: MLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 4.5e-27 | 33.61 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVY---KKIVNNTVAFLILYVDDILL-IGK
MDVKTAFLNG L E IYM P+G VC L+++IYGLKQA+R W F++A+K F + + C+Y K +N + +++LYVDD+++ G
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVY---KKIVNNTVAFLILYVDDILL-IGK
Query: EIVWNRRNRTLA---------------------------MSQASYIDKMLSRYKMKNFKKGLLPFRHVVH---LSKNQCPKTPQEVEDMRRISYASAVGS
N R L +SQ++Y+ K+LS++ M+N P ++ L+ ++ TP S +G
Subjt: EIVWNRRNRTLA---------------------------MSQASYIDKMLSRYKMKNFKKGLLPFRHVVH---LSKNQCPKTPQEVEDMRRISYASAVGS
Query: LMYAMLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRT
LMY MLCTRPD+ AV I++RY S + W +K +L+YL+ T
Subjt: LMYAMLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRT
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.2e-53 | 44.4 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVY-KKIVNNTVAFLILYVDDILLIGKE--
+DVKTAFL+G L+E IYM+QP+GF G++ VC L++S+YGLKQA R W ++FD +KS + + +PCVY K+ N L+LYVDD+L++GK+
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVY-KKIVNNTVAFLILYVDDILLIGKE--
Query: ----------------------------IVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMY
IV R +R L +SQ YI+++L R+ MKN K P + LSK CP T +E +M ++ Y+SAVGSLMY
Subjt: ----------------------------IVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMY
Query: AMLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRT
AM+CTRPDI +AVG+V+R+ NP +HW VK IL+YLR T
Subjt: AMLCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRT
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| P25600 Putative transposon Ty5-1 protein YCL074W | 3.3e-22 | 29.05 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILL-------
MDV TAFLN +DE IY+ QP GF+ + V L+ +YGLKQA WN + +K GF ++ E +Y + ++ ++ +YVDD+L+
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILL-------
Query: ---IGKEI-------------------VWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYAM
+ +E+ + N + +S YI K S ++ FK P + SK T ++D+ Y S VG L++
Subjt: ---IGKEI-------------------VWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYAM
Query: LCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
RPDI Y V +++R+ PR H + + +L+YL TR+
Subjt: LCTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.3e-23 | 30.83 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGKE---
+DV AFL G L + +YM QP GFI + + VC L +++YGLKQA R+W + + + GF +V + ++ ++ ++++YVDDIL+ G +
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGKE---
Query: -------------------------IVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYAML
I R L +SQ YI +L+R M K P LS K E Y VGSL Y +
Subjt: -------------------------IVWNRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYAML
Query: CTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
TRPDI YAV ++++ P +H +K IL+YL T N
Subjt: CTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRTRN
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.4e-26 | 30.25 | Show/hide |
Query: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGKEIVW
+DV AFL G L + +YM QP GF+ + + VC L ++IYGLKQA R+W + + + GF ++ + ++ ++ ++++YVDDIL+ G + V
Subjt: MDVKTAFLNGKLDETIYMDQPKGFITQGQEQKVCPLHRSIYGLKQASRSWNIRFDEAIKSYGFDQNVDEPCVYKKIVNNTVAFLILYVDDILLIGKEIVW
Query: ----------------------------NRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYAML
R + L +SQ Y +L+R M K P L+ + K P E Y VGSL Y +
Subjt: ----------------------------NRRNRTLAMSQASYIDKMLSRYKMKNFKKGLLPFRHVVHLSKNQCPKTPQEVEDMRRISYASAVGSLMYAML
Query: CTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRT
TRPD+ YAV +++Y P DHW +K +L+YL T
Subjt: CTRPDICYAVGIVNRYQSNPRLDHWTTVKTILKYLRRT
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