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Tan0011983 (gene) of Snake gourd v1 genome

Gene IDTan0011983
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:12300508..12302074
RNA-Seq ExpressionTan0011983
SyntenyTan0011983
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KDO37767.1 hypothetical protein CISIN_1g046558mg, partial [Citrus sinensis]2.0e-0833.33Show/hide
Query:  VQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHD
        VQ   WSPP+EG LK+N D A    + L  +G +V++H+G  +A  +   +   DV ++ A A+L GMQ A ++G  ++ +ESD+K +++ I+       
Subjt:  VQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHD

Query:  GPIWL
           W+
Subjt:  GPIWL

OMO61345.1 reverse transcriptase [Corchorus capsularis]3.5e-0831.82Show/hide
Query:  WSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL
        W+PP+ G+LKLN D A + S  +  +G ++RD  G +I   +  +    +V+ A  LA+L G+++A E G+ +L +ESD+K  ++ I K   +    +W+
Subjt:  WSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL

Query:  NQLVVSDFNT
           ++ D  T
Subjt:  NQLVVSDFNT

XP_038722039.1 uncharacterized protein LOC120014190 [Tripterygium wilfordii]3.4e-1137.23Show/hide
Query:  LPVQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAI
        +P Q   W PP     KLN D A   +D  + IG ++RDH+G +    +E+I G+   ++A A  +L+GMQ++GE+G+R+  +ESD+   + AI
Subjt:  LPVQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAI

XP_040987711.1 uncharacterized protein LOC121235433 [Juglans microcarpa x Juglans regia]9.2e-0933.33Show/hide
Query:  PVQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKH----
        P+Q  +WSPP  G++K+N D A     + + IG + RDH G +IA K     G +  L+AVA+   + +++A E    ++  E D+  +VQAI+ H    
Subjt:  PVQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKH----

Query:  ----LMAHDGPIWLNQLVVSDFN
            L+  D  + L Q+V   FN
Subjt:  ----LMAHDGPIWLNQLVVSDFN

XP_041017966.1 uncharacterized protein LOC121260189 [Juglans microcarpa x Juglans regia]1.9e-0934.15Show/hide
Query:  PVQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKH----
        P+Q  +WSPP  G++K+N D A     + + IG + RDH GR+IA K     G +  L+A A+   +G+++A E    ++  E D+  +VQAI+ H    
Subjt:  PVQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKH----

Query:  ----LMAHDGPIWLNQLVVSDFN
            L+  D  + L Q+V   FN
Subjt:  ----LMAHDGPIWLNQLVVSDFN

TrEMBL top hitse value%identityAlignment
A0A067DFH2 RNase H domain-containing protein (Fragment)9.9e-0933.33Show/hide
Query:  VQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHD
        VQ   WSPP+EG LK+N D A    + L  +G +V++H+G  +A  +   +   DV ++ A A+L GMQ A ++G  ++ +ESD+K +++ I+       
Subjt:  VQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHD

Query:  GPIWL
           W+
Subjt:  GPIWL

A0A1R3G5P8 PCI domain-containing protein1.1e-0731.78Show/hide
Query:  WSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL
        W PP++GVLKLN D A +    +  +  ++RD  G ++   +  I+    VL A  LA+L G+++A E GY +L +ES +K  ++ I K     +  +W+
Subjt:  WSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL

Query:  NQLVVSD
        +  ++ D
Subjt:  NQLVVSD

A0A1R3GTB5 Reverse transcriptase1.7e-0831.82Show/hide
Query:  WSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL
        W+PP+ G+LKLN D A + S  +  +G ++RD  G +I   +  +    +V+ A  LA+L G+++A E G+ +L +ESD+K  ++ I K   +    +W+
Subjt:  WSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL

Query:  NQLVVSDFNT
           ++ D  T
Subjt:  NQLVVSDFNT

A0A2H5Q972 Uncharacterized protein (Fragment)3.2e-0731Show/hide
Query:  WSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL
        W+PP+EG +K+NTD A +   NL  +G ++RD  G++ A  I++ +    V  A A AM  G+Q+A ++  +++ +ESD++ +V  ++    +     W+
Subjt:  WSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL

A0A396J1D6 Putative ribonuclease H-like domain-containing protein2.4e-0735.87Show/hide
Query:  PEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHK
        P +W  PK G  KLN D +C        IG +VR+H    +    E I G+ +  +A  LA+ +G+++  E+G+ ++W+E DAK LV+ I K
Subjt:  PEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTTTACCAGTTCAACCCGAAGTGTGGAGTCCACCAAAAGAGGGTGTTCTGAAACTTAACACTGACGTTGCTTGTCATCCGAGCGATAACCTAATGGAAATAGG
CACAATTGTGAGAGATCACAGAGGAAGATTGATAGCTGTGAAAATAGAGATTATCCAAGGGAGAATAGACGTTTTGGTTGCAGTAGCTCTTGCAATGTTGAAAGGAATGC
AAATGGCAGGAGAGTCAGGCTACCGAAATCTATGGATCGAATCTGATGCCAAGTGTCTGGTTCAAGCCATCCACAAACATTTAATGGCTCATGATGGACCTATATGGCTT
AATCAGTTAGTTGTTTCTGATTTTAATACTAGTGTAGTTTTGGTTGATCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTTTACCAGTTCAACCCGAAGTGTGGAGTCCACCAAAAGAGGGTGTTCTGAAACTTAACACTGACGTTGCTTGTCATCCGAGCGATAACCTAATGGAAATAGG
CACAATTGTGAGAGATCACAGAGGAAGATTGATAGCTGTGAAAATAGAGATTATCCAAGGGAGAATAGACGTTTTGGTTGCAGTAGCTCTTGCAATGTTGAAAGGAATGC
AAATGGCAGGAGAGTCAGGCTACCGAAATCTATGGATCGAATCTGATGCCAAGTGTCTGGTTCAAGCCATCCACAAACATTTAATGGCTCATGATGGACCTATATGGCTT
AATCAGTTAGTTGTTTCTGATTTTAATACTAGTGTAGTTTTGGTTGATCATTAA
Protein sequenceShow/hide protein sequence
MSSLPVQPEVWSPPKEGVLKLNTDVACHPSDNLMEIGTIVRDHRGRLIAVKIEIIQGRIDVLVAVALAMLKGMQMAGESGYRNLWIESDAKCLVQAIHKHLMAHDGPIWL
NQLVVSDFNTSVVLVDH