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Tan0012147 (gene) of Snake gourd v1 genome

Gene IDTan0012147
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG01:109367568..109372433
RNA-Seq ExpressionTan0012147
SyntenyTan0012147
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059584.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-0950.67Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV
        MC QGMHWVLL+I QGIKPRTFEELATR HDMEL  +D+  +  NF  +E+  +    +    +V S +K  + V
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV

KAA0063852.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-0956.06Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVEL-FDEVNNDQKIHSLV
        MC QGMHW LLYI QGIKPRTFEELATRTHDMEL  +++ E+     +     +E+N+ +KI + V
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVEL-FDEVNNDQKIHSLV

PIN10178.1 hypothetical protein CDL12_17234 [Handroanthus impetiginosus]6.3e-0994.12Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMEL
        MCIQGMHW LLYIFQGIKPRTFEELATR HDMEL
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMEL

TYK01334.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.3e-0950.67Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV
        MC QGMHW L YI QGIKPRTFEELATR HD+EL  + +  +  + L+V    +  ND K   +V S IK  + V
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV

TYK25790.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-0950.67Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV
        MC QGMHWVLL+I QGIKPRTFEELATR HDMEL  +D+  +  NF  +E+  +    +    +V S +K  + V
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV

TrEMBL top hitse value%identityAlignment
A0A2N9FNB6 Ribonuclease H1.1e-0970.83Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLK
        MCIQGMHW LLYI QGIKPRTFEELATR HDMEL  + Q E+ +   K
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLK

A0A2N9GU49 Uncharacterized protein1.6e-1048.72Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLK---VELFDEVNNDQKIHSLVPSRIKRKLSV
        MCIQGMHW LLYI QGIKPRTFEELATR HDMEL  + + E+ +   K   V +F +   ++++      R +R+L++
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLK---VELFDEVNNDQKIHSLVPSRIKRKLSV

A0A2N9J370 Ribonuclease H1.1e-0948.68Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLK---VELFDEVNNDQKIHSLVPSRIKRKL
        MCIQGMHW LLYI QGIKPRTFEELATR HDMEL  + + E+ +   +   V +F +   ++++      R +R+L
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLK---VELFDEVNNDQKIHSLVPSRIKRKL

A0A5A7UWW2 Ty3-gypsy retrotransposon protein6.2e-1050.67Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV
        MC QGMHWVLL+I QGIKPRTFEELATR HDMEL  +D+  +  NF  +E+  +    +    +V S +K  + V
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV

A0A5D3DR73 Ty3-gypsy retrotransposon protein6.2e-1050.67Show/hide
Query:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV
        MC QGMHWVLL+I QGIKPRTFEELATR HDMEL  +D+  +  NF  +E+  +    +    +V S +K  + V
Subjt:  MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCATTCAAGGCATGCATTGGGTTCTACTTTACATCTTCCAAGGTATAAAGCCTCGCACCTTTGAAGAGCTAGCAACTCGCACCCACGATATGGAGTTGATAACAAG
CGATCAACATGAAAGAAAGATGAATTTCTTAAAGGTAGAACTGTTCGATGAAGTGAACAACGACCAAAAAATTCACAGTCTTGTTCCTTCGCGTATAAAAAGGAAGCTCT
CTGTTCTCATAAACGCAGAGAGTTCCTTGAAACTCATTCTCCTAAAGTTCGAGCTTCATTCTCCTCAAGTTTGGTTTGTCGCTCATTATTCTAAAGTTCAAGGTTCGTTC
CCCTCAAGTTCGCGTTGCTTACTTCACGATAAGTTATTCATTCATTTCAAGTTCGACGTATCACTCCTTCATGATCTAGGATGCTTCATCCTTCGACACTCATTCCTCTT
CCTCAGAGTGCAAGTACACCCAGATGCACACAAGGGTCCCACAAGTGTATATGCGCTCGGAACGAGGAAGTCCTGTAGCTGCAAGTACACCCGGCACCGACAAGGGTCCC
ACAAGTGTATATGCGCTCGGAATAGGGAAGTCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCATTCAAGGCATGCATTGGGTTCTACTTTACATCTTCCAAGGTATAAAGCCTCGCACCTTTGAAGAGCTAGCAACTCGCACCCACGATATGGAGTTGATAACAAG
CGATCAACATGAAAGAAAGATGAATTTCTTAAAGGTAGAACTGTTCGATGAAGTGAACAACGACCAAAAAATTCACAGTCTTGTTCCTTCGCGTATAAAAAGGAAGCTCT
CTGTTCTCATAAACGCAGAGAGTTCCTTGAAACTCATTCTCCTAAAGTTCGAGCTTCATTCTCCTCAAGTTTGGTTTGTCGCTCATTATTCTAAAGTTCAAGGTTCGTTC
CCCTCAAGTTCGCGTTGCTTACTTCACGATAAGTTATTCATTCATTTCAAGTTCGACGTATCACTCCTTCATGATCTAGGATGCTTCATCCTTCGACACTCATTCCTCTT
CCTCAGAGTGCAAGTACACCCAGATGCACACAAGGGTCCCACAAGTGTATATGCGCTCGGAACGAGGAAGTCCTGTAGCTGCAAGTACACCCGGCACCGACAAGGGTCCC
ACAAGTGTATATGCGCTCGGAATAGGGAAGTCTTGTAG
Protein sequenceShow/hide protein sequence
MCIQGMHWVLLYIFQGIKPRTFEELATRTHDMELITSDQHERKMNFLKVELFDEVNNDQKIHSLVPSRIKRKLSVLINAESSLKLILLKFELHSPQVWFVAHYSKVQGSF
PSSSRCLLHDKLFIHFKFDVSLLHDLGCFILRHSFLFLRVQVHPDAHKGPTSVYALGTRKSCSCKYTRHRQGSHKCICARNREVL