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Tan0012198 (gene) of Snake gourd v1 genome

Gene IDTan0012198
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H protein
Genome locationLG04:17746425..17748462
RNA-Seq ExpressionTan0012198
SyntenyTan0012198
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKA49974.1 Putative ribonuclease H protein [Apostasia shenzhenica]6.3e-0939.18Show/hide
Query:  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVE-GRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV
        WR SILWG+DL +   RW+IGNG  + +F DPWL      Q     +P LA + I  LL EDG W+ +KI       D   IL++P      +D ++
Subjt:  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVE-GRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]1.6e-1238.1Show/hide
Query:  KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHN
        KL       WR SILWG+DLF++ YRWK+GNG  I++ +DPWL  +G   P+     +   ++  L++  G WD  K+R  F   +   ILQ P      
Subjt:  KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHN

Query:  NDEIV
        +DEI+
Subjt:  NDEIV

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]1.3e-0936.46Show/hide
Query:  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV
        WR SI+WG+ + ++  RW+IGNG +I+IF+D WL       P+        S +  L+K D +WD  K+R+ F + D   IL+IP       DE++
Subjt:  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV

XP_030494695.1 uncharacterized protein LOC115710475 [Cannabis sativa]4.8e-0935.71Show/hide
Query:  YWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ-STIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV
        Y   S+LWG+DL      WK+GNGC I  F DPW+   G + P + S +L     +   +  +G WD  K+ + F +  V +IL++P  G+H  D I+
Subjt:  YWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ-STIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV

XP_030502376.1 uncharacterized protein LOC115717528 [Cannabis sativa]3.7e-0931.19Show/hide
Query:  LEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGI
        LE +P     +  +SILWG+DL      WK+ NG  I    D WL     +     +P  +  ++   + + G WDV K++ CF E  V +IL +P +G 
Subjt:  LEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGI

Query:  HNNDEIVLE
        + +D+++ E
Subjt:  HNNDEIVLE

TrEMBL top hitse value%identityAlignment
A0A2I0A354 Ribonuclease H protein3.0e-0939.18Show/hide
Query:  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVE-GRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV
        WR SILWG+DL +   RW+IGNG  + +F DPWL      Q     +P LA + I  LL EDG W+ +KI       D   IL++P      +D ++
Subjt:  WRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVE-GRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV

A0A6J1DRA0 uncharacterized protein LOC1110224237.7e-1338.1Show/hide
Query:  KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHN
        KL       WR SILWG+DLF++ YRWK+GNG  I++ +DPWL  +G   P+     +   ++  L++  G WD  K+R  F   +   ILQ P      
Subjt:  KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHN

Query:  NDEIV
        +DEI+
Subjt:  NDEIV

A0A803NFC8 Uncharacterized protein1.8e-0931.19Show/hide
Query:  LEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGI
        LE +P     +  +SILWG+DL      WK+ NG  I    D WL     +     +P  +  ++   + + G WDV K++ CF E  V +IL +P +G 
Subjt:  LEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGI

Query:  HNNDEIVLE
        + +D+++ E
Subjt:  HNNDEIVLE

A0A803PV88 Uncharacterized protein3.6e-1035.71Show/hide
Query:  YWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ-STIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV
        Y   S+LWG+DL +    WKIGNGC +  F DPW  +   + P + S +L    T+   +   G W+ DK+   F    V +IL++P  G+H +D +V
Subjt:  YWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQ-STIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV

A0A803QDR8 Uncharacterized protein2.5e-1135.14Show/hide
Query:  KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQS------TIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIP
        KL       W  S+LWG+DL +    WKIGNGC + IF DPW+       P + SP L  +      T+   +   G W  DK+   F +  + +IL++P
Subjt:  KLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQS------TIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIP

Query:  RYGIHNNDEIV
          G+H ND +V
Subjt:  RYGIHNNDEIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACCTGGAGAAACTTCCTGAAGAAGAGGACCTTTACTGGCGTCAAAGCATCCTTTGGGGTCAGGATTTGTTTAGAGAAGAGTACAGATGGAAGATTGGAAATGG
ATGTCAGATCAGTATATTTAATGATCCATGGCTCACGGTGGAAGGTCGGCAGCACCCGATGATGGTGAGTCCCGAACTGGCTCAAAGCACGATTCGTAGTCTGTTAAAAG
AAGACGGGGAGTGGGACGTTGATAAGATCCGAAGGTGTTTCCAGGAAGATGATGTTGGTAATATTCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTT
TTGGAAGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACCTGGAGAAACTTCCTGAAGAAGAGGACCTTTACTGGCGTCAAAGCATCCTTTGGGGTCAGGATTTGTTTAGAGAAGAGTACAGATGGAAGATTGGAAATGG
ATGTCAGATCAGTATATTTAATGATCCATGGCTCACGGTGGAAGGTCGGCAGCACCCGATGATGGTGAGTCCCGAACTGGCTCAAAGCACGATTCGTAGTCTGTTAAAAG
AAGACGGGGAGTGGGACGTTGATAAGATCCGAAGGTGTTTCCAGGAAGATGATGTTGGTAATATTCTCCAAATCCCACGTTACGGGATACATAATAATGACGAAATTGTT
TTGGAAGTATAA
Protein sequenceShow/hide protein sequence
MADLEKLPEEEDLYWRQSILWGQDLFREEYRWKIGNGCQISIFNDPWLTVEGRQHPMMVSPELAQSTIRSLLKEDGEWDVDKIRRCFQEDDVGNILQIPRYGIHNNDEIV
LEV