; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0012239 (gene) of Snake gourd v1 genome

Gene IDTan0012239
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG02:71805644..71806608
RNA-Seq ExpressionTan0012239
SyntenyTan0012239
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038417.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]3.4e-4353.3Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------SLPGREQRRFTPRVNVSS
        E  YYPSTY EAKRDEFL LKQGS SV EYER+YTELSR+ADVIVASESD                                   GREQRRFTP +N+SS
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------SLPGREQRRFTPRVNVSS

Query:  SQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGV
         Q+FKNR+ GQ SR ++ G  +QRQSQR PSQ  RST R Q  QE VAS  R+TPC +CG+NHR                GH K+D PQL    QR+QGV
Subjt:  SQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGV

Query:  GSQTVELPRVPV
        GSQTVE  RV V
Subjt:  GSQTVELPRVPV

KAA0040646.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.9e-4454.07Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD-----------------------------SLPGREQRRFTPRVNVSSSQN
        E  YYPSTY EAKRDEFL LKQGS SVAEYER+YTELSR+A+VIVASESD                                GREQRRFTP +N+SS Q+
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD-----------------------------SLPGREQRRFTPRVNVSSSQN

Query:  FKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGVGSQ
        FKNR+ GQ SR ++ G  +QRQSQR PSQ  RST R Q  QE +AS  RRTPC +CG+NHR                GHFK+D PQL    +R+QGVGSQ
Subjt:  FKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGVGSQ

Query:  TVELPRVPV
        TVE  RV V
Subjt:  TVELPRVPV

KAA0053247.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-4253.96Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD----------------------SLPGREQRRFTPRVNVSSSQNFKNRASG
        E  YYPSTY EAKRDEFL LKQGS  VAEYER+YTE+SR+ADVIVA ESD                         GREQRRFTP +N+SS Q+FKNR+ G
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD----------------------SLPGREQRRFTPRVNVSSSQNFKNRASG

Query:  QTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGVGSQTVELPRV
        + SR M+ G  +QRQSQ  PSQ  RST R Q  QE +AS+ RRT C +CG+NHR                GHFK+D PQL    Q +QGVGSQTVE  RV
Subjt:  QTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGVGSQTVELPRV

Query:  PV
         V
Subjt:  PV

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.4e-4147.26Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------------------------
        E  YYPSTY EAKRDEFL LKQGS SVAEYER+YTELSR+ADVI+ASESD                                                  
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------------------------

Query:  -------SLPGREQRRFTPRVNVSSSQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR-----------
                  GREQRRFTP +N+SS Q+FKNR+ GQ SR ++ G  +QRQSQR PSQ  RST R Q  QE +AS  RR PC +CG+NHR           
Subjt:  -------SLPGREQRRFTPRVNVSSSQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR-----------

Query:  -----GHFKRDYPQLRAAAQRNQGVGSQTVELPRVPV
             GHFK+D PQL    QR+QGVGSQT+E  RV V
Subjt:  -----GHFKRDYPQLRAAAQRNQGVGSQTVELPRVPV

KAA0067811.1 putative Gag-pol protein [Cucumis melo var. makuwa]3.2e-4147.26Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------------------------
        E  YYPSTY EAKRDEFL LKQGS SVAEYER+YTELSR+ADVI+ASESD                                                  
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------------------------

Query:  -------SLPGREQRRFTPRVNVSSSQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR-----------
                  GREQRRFTP +N+SS Q+FKNR+ GQ SR ++ G  +QRQSQR PSQ  RST R Q  QE +AS  RR PC +CG+NHR           
Subjt:  -------SLPGREQRRFTPRVNVSSSQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR-----------

Query:  -----GHFKRDYPQLRAAAQRNQGVGSQTVELPRVPV
             GHFK+D PQL+   QR+QGVGSQT+E  RV V
Subjt:  -----GHFKRDYPQLRAAAQRNQGVGSQTVELPRVPV

TrEMBL top hitse value%identityAlignment
A0A0A0KFN3 Uncharacterized protein3.9e-4561.36Show/hide
Query:  YYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD------SLPG---------------REQRRFTPRVNVSSSQNFKNRASGQTSR
        YYP TY E  RDEFL LKQGS SVAEYER+YTELSR+A+VI+ASES+      S+ G               REQRRFTP V  SS Q+FKNR+ GQ SR
Subjt:  YYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD------SLPG---------------REQRRFTPRVNVSSSQNFKNRASGQTSR

Query:  QMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHRGHFKRDYPQLRAAAQRNQGVGSQTVE
         M+ G  +Q QSQ  P+QS RST RPQ  +EFVAS  RRTPC +CGKNHRGHFK+DYPQL    Q++QGVGSQTVE
Subjt:  QMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHRGHFKRDYPQLRAAAQRNQGVGSQTVE

A0A5A7TA17 Putative gag-pol polyprotein1.6e-4353.3Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------SLPGREQRRFTPRVNVSS
        E  YYPSTY EAKRDEFL LKQGS SV EYER+YTELSR+ADVIVASESD                                   GREQRRFTP +N+SS
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------SLPGREQRRFTPRVNVSS

Query:  SQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGV
         Q+FKNR+ GQ SR ++ G  +QRQSQR PSQ  RST R Q  QE VAS  R+TPC +CG+NHR                GH K+D PQL    QR+QGV
Subjt:  SQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGV

Query:  GSQTVELPRVPV
        GSQTVE  RV V
Subjt:  GSQTVELPRVPV

A0A5A7TF49 DNA/RNA polymerases superfamily protein4.3e-4454.07Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD-----------------------------SLPGREQRRFTPRVNVSSSQN
        E  YYPSTY EAKRDEFL LKQGS SVAEYER+YTELSR+A+VIVASESD                                GREQRRFTP +N+SS Q+
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD-----------------------------SLPGREQRRFTPRVNVSSSQN

Query:  FKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGVGSQ
        FKNR+ GQ SR ++ G  +QRQSQR PSQ  RST R Q  QE +AS  RRTPC +CG+NHR                GHFK+D PQL    +R+QGVGSQ
Subjt:  FKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGVGSQ

Query:  TVELPRVPV
        TVE  RV V
Subjt:  TVELPRVPV

A0A5A7UFH6 DNA/RNA polymerases superfamily protein1.8e-4253.96Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD----------------------SLPGREQRRFTPRVNVSSSQNFKNRASG
        E  YYPSTY EAKRDEFL LKQGS  VAEYER+YTE+SR+ADVIVA ESD                         GREQRRFTP +N+SS Q+FKNR+ G
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD----------------------SLPGREQRRFTPRVNVSSSQNFKNRASG

Query:  QTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGVGSQTVELPRV
        + SR M+ G  +QRQSQ  PSQ  RST R Q  QE +AS+ RRT C +CG+NHR                GHFK+D PQL    Q +QGVGSQTVE  RV
Subjt:  QTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR----------------GHFKRDYPQLRAAAQRNQGVGSQTVELPRV

Query:  PV
         V
Subjt:  PV

A0A5A7VQD2 Putative Gag-pol protein1.5e-4147.26Show/hide
Query:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------------------------
        E  YYPSTY EAKRDEFL LKQGS SVAEYER+YTELSR+ADVI+ASESD                                                  
Subjt:  EYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESD--------------------------------------------------

Query:  -------SLPGREQRRFTPRVNVSSSQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR-----------
                  GREQRRFTP +N+SS Q+FKNR+ GQ SR ++ G  +QRQSQR PSQ  RST R Q  QE +AS  RR PC +CG+NHR           
Subjt:  -------SLPGREQRRFTPRVNVSSSQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQTVQEFVASVARRTPCANCGKNHR-----------

Query:  -----GHFKRDYPQLRAAAQRNQGVGSQTVELPRVPV
             GHFK+D PQL+   QR+QGVGSQT+E  RV V
Subjt:  -----GHFKRDYPQLRAAAQRNQGVGSQTVELPRVPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATACAACTATTATCCTAGCACGTACCGCGAGGCAAAGAGGGATGAATTTTTAGAACTGAAGCAAGGGTCACATTCAGTGGCTGAGTACGAGAGAAGGTATACCGA
GCTGTCACGACATGCTGATGTGATTGTTGCATCTGAGAGTGACAGTCTTCCGGGTCGTGAACAGCGAAGATTCACACCCAGAGTGAATGTTTCAAGTAGTCAGAACTTTA
AGAATCGAGCTAGCGGCCAAACATCGAGGCAGATGAATGTGGGTGGTGCCTATCAGAGGCAGAGTCAAAGAGAACCTAGTCAATCTGCTAGATCCACTGCAAGACCGCAG
ACAGTGCAAGAGTTTGTTGCCAGTGTAGCAAGGAGAACACCTTGTGCAAATTGTGGAAAGAATCATCGAGGGCATTTCAAGAGGGATTATCCACAGCTTAGAGCAGCCGC
GCAGAGGAACCAAGGAGTTGGGTCCCAGACAGTTGAGCTGCCGAGAGTTCCAGTAGATGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATACAACTATTATCCTAGCACGTACCGCGAGGCAAAGAGGGATGAATTTTTAGAACTGAAGCAAGGGTCACATTCAGTGGCTGAGTACGAGAGAAGGTATACCGA
GCTGTCACGACATGCTGATGTGATTGTTGCATCTGAGAGTGACAGTCTTCCGGGTCGTGAACAGCGAAGATTCACACCCAGAGTGAATGTTTCAAGTAGTCAGAACTTTA
AGAATCGAGCTAGCGGCCAAACATCGAGGCAGATGAATGTGGGTGGTGCCTATCAGAGGCAGAGTCAAAGAGAACCTAGTCAATCTGCTAGATCCACTGCAAGACCGCAG
ACAGTGCAAGAGTTTGTTGCCAGTGTAGCAAGGAGAACACCTTGTGCAAATTGTGGAAAGAATCATCGAGGGCATTTCAAGAGGGATTATCCACAGCTTAGAGCAGCCGC
GCAGAGGAACCAAGGAGTTGGGTCCCAGACAGTTGAGCTGCCGAGAGTTCCAGTAGATGCATGA
Protein sequenceShow/hide protein sequence
MEYNYYPSTYREAKRDEFLELKQGSHSVAEYERRYTELSRHADVIVASESDSLPGREQRRFTPRVNVSSSQNFKNRASGQTSRQMNVGGAYQRQSQREPSQSARSTARPQ
TVQEFVASVARRTPCANCGKNHRGHFKRDYPQLRAAAQRNQGVGSQTVELPRVPVDA