; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0012248 (gene) of Snake gourd v1 genome

Gene IDTan0012248
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionEukaryotic translation initiation factor 4C
Genome locationLG02:3531085..3532515
RNA-Seq ExpressionTan0012248
SyntenyTan0012248
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR001253 - Translation initiation factor 1A (eIF-1A)
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144524.1 eukaryotic translation initiation factor 1A [Cucumis sativus]2.6e-4580.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDK----DFDIEFMDEDFD
        GMD+D     D  IEF DED D
Subjt:  GMDEDK----DFDIEFMDEDFD

XP_009124264.1 eukaryotic translation initiation factor 1A [Brassica rapa]9.8e-4577.87Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K EL+FKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDI+LVGLRD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKDFD----IEFMDEDFD
         +DED D      +EF DED D
Subjt:  GMDEDKDFD----IEFMDEDFD

XP_018458129.1 PREDICTED: eukaryotic translation initiation factor 1A [Raphanus sativus]4.4e-4577.87Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K EL+FKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDI+LVGLRD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKDFD----IEFMDEDFD
         +DED D +    +EF DED D
Subjt:  GMDEDKDFD----IEFMDEDFD

XP_022135622.1 eukaryotic translation initiation factor 1A-like [Momordica charantia]2.6e-4580.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLR+ QDDKADVILKYM DE RLLK YSELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDK----DFDIEFMDEDFD
        GMD+D     D  IEF DED D
Subjt:  GMDEDK----DFDIEFMDEDFD

XP_022930658.1 eukaryotic translation initiation factor 1A-like [Cucurbita moschata]2.6e-4580.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDK----DFDIEFMDEDFD
        GMD+D     D  IEF DED D
Subjt:  GMDEDK----DFDIEFMDEDFD

TrEMBL top hitse value%identityAlignment
A0A0A0K1Y5 Eukaryotic translation initiation factor 4C1.3e-4580.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDK----DFDIEFMDEDFD
        GMD+D     D  IEF DED D
Subjt:  GMDEDK----DFDIEFMDEDFD

A0A5A7UZV0 Eukaryotic translation initiation factor 4C1.3e-4580.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDK----DFDIEFMDEDFD
        GMD+D     D  IEF DED D
Subjt:  GMDEDK----DFDIEFMDEDFD

A0A6J1C384 Eukaryotic translation initiation factor 4C1.3e-4580.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLR+ QDDKADVILKYM DE RLLK YSELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDK----DFDIEFMDEDFD
        GMD+D     D  IEF DED D
Subjt:  GMDEDK----DFDIEFMDEDFD

A0A6J1EVW9 Eukaryotic translation initiation factor 4C1.3e-4580.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDK----DFDIEFMDEDFD
        GMD+D     D  IEF DED D
Subjt:  GMDEDK----DFDIEFMDEDFD

A0A6J1JL52 Eukaryotic translation initiation factor 4C1.3e-4580.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYM DE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDK----DFDIEFMDEDFD
        GMD+D     D  IEF DED D
Subjt:  GMDEDK----DFDIEFMDEDFD

SwissProt top hitse value%identityAlignment
P47813 Eukaryotic translation initiation factor 1A, X-chromosomal9.0e-3360.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQV++ LGNG   AMC DG KRLCHI  K+  KVWI   DIILVGLRD QD+KADVILKY +DE R LK Y ELPE+ ++ E    
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKDF---DIEFMDEDFD
        G  +D +    DI   DED D
Subjt:  GMDEDKDF---DIEFMDEDFD

P47815 Eukaryotic translation initiation factor 1A1.1e-4171.9Show/hide
Query:  KGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGI-VG
        K ELVFKEDGQEYAQV R LGNG C A+C+DGTKRLCHI  KMH KVWIAAGDI+LVGLRD QDDKADVILKYM+DE RLLK Y ELP+  RL EG+ V 
Subjt:  KGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGI-VG

Query:  GMDE---DKDFDIEFMDEDFD
        G +E   D D+ I+F DED D
Subjt:  GMDE---DKDFDIEFMDEDFD

P56331 Eukaryotic translation initiation factor 1A1.0e-4477.69Show/hide
Query:  KGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGI-VG
        K ELVFKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILK M DE RLLK Y ELP+NTRL EGI  G
Subjt:  KGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGI-VG

Query:  GMDEDKDFD---IEFMDEDFD
        G+DE+ D     IEF DED D
Subjt:  GMDEDKDFD---IEFMDEDFD

Q5RA42 Eukaryotic translation initiation factor 1A, X-chromosomal9.0e-3360.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQV++ LGNG   AMC DG KRLCHI  K+  KVWI   DIILVGLRD QD+KADVILKY +DE R LK Y ELPE+ ++ E    
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKDF---DIEFMDEDFD
        G  +D +    DI   DED D
Subjt:  GMDEDKDF---DIEFMDEDFD

Q8BMJ3 Eukaryotic translation initiation factor 1A, X-chromosomal9.0e-3360.33Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K ELVFKEDGQEYAQV++ LGNG   AMC DG KRLCHI  K+  KVWI   DIILVGLRD QD+KADVILKY +DE R LK Y ELPE+ ++ E    
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKDF---DIEFMDEDFD
        G  +D +    DI   DED D
Subjt:  GMDEDKDF---DIEFMDEDFD

Arabidopsis top hitse value%identityAlignment
AT2G04520.1 Nucleic acid-binding, OB-fold-like protein2.7e-4876.23Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K EL+FKEDGQEYAQVLR LGNG C AMCIDGTKRLCHI  KMH KVWIAAGDI+LVGLRD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKDFD----IEFMDEDFD
         +++D D +    +EF DED D
Subjt:  GMDEDKDFD----IEFMDEDFD

AT5G35680.1 Nucleic acid-binding, OB-fold-like protein1.3e-4777.05Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K EL+FKEDGQEYAQVLR LGNG C  MCIDG KRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKDF----DIEFMDEDFD
         +D+D D      IEF DED D
Subjt:  GMDEDKDF----DIEFMDEDFD

AT5G35680.2 Nucleic acid-binding, OB-fold-like protein1.3e-4777.05Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K EL+FKEDGQEYAQVLR LGNG C  MCIDG KRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKDF----DIEFMDEDFD
         +D+D D      IEF DED D
Subjt:  GMDEDKDF----DIEFMDEDFD

AT5G35680.3 Nucleic acid-binding, OB-fold-like protein2.5e-4681.31Show/hide
Query:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG
        +K EL+FKEDGQEYAQVLR LGNG C  MCIDG KRLCHI  KMH KVWIAAGDIILVGLRD QDDKADVILKYMSDE RLLK Y ELPENTRL EGIVG
Subjt:  KKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVG

Query:  GMDEDKD
         +D+D D
Subjt:  GMDEDKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAGAAGGGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAGTATGCCCAAGTACTCCGGAGGCTCGGTAATGGTCATTGTGTAGCAATGTGTATCGACGGGACTAA
ACGTCTTTGCCATATTGGGGAAAAAATGCACAACAAAGTTTGGATTGCAGCTGGGGATATCATACTTGTTGGTCTTCGTGACAATCAAGACGACAAGGCTGATGTGATTC
TTAAATACATGTCTGATGAAGTTAGGCTTTTGAAAGGATACAGTGAGCTACCTGAGAATACACGTCTCAAAGAGGGTATCGTTGGGGGTATGGATGAGGACAAAGATTTT
GATATCGAGTTTATGGACGAAGATTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
AAATTCTGTTTGTTACAGCTGTAATATTAGTCTATTCTTTTTATTCTTTATTCTTTACATTTACTCGTGTGTGTATAAAGAGGTAGCCAACCCTCAGGCATTCGCATTGG
AAATAGTGAATAGTCTTCTCCTCAGACAAGTATAATCTGCAATCATGCCAAAGAAGGGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAGTATGCCCAAGTACTCCGGAGG
CTCGGTAATGGTCATTGTGTAGCAATGTGTATCGACGGGACTAAACGTCTTTGCCATATTGGGGAAAAAATGCACAACAAAGTTTGGATTGCAGCTGGGGATATCATACT
TGTTGGTCTTCGTGACAATCAAGACGACAAGGCTGATGTGATTCTTAAATACATGTCTGATGAAGTTAGGCTTTTGAAAGGATACAGTGAGCTACCTGAGAATACACGTC
TCAAAGAGGGTATCGTTGGGGGTATGGATGAGGACAAAGATTTTGATATCGAGTTTATGGACGAAGATTTTGATTAGATTTAGATGTTAGTCCTCTGTTTCGAACTATAT
ATTAGTAAAGAAATAACTGTACTATAGGGGGGTGAAGTTGTATTAACGAATTCCATTTCATAATAGCCTTGAGAATGCAGATGGAATCGGTTCTATTCCATGTAACATCT
GTTCTTTTATACTGTATGATTGCTTATGCCCCTTCTGGCCAATAATACTTCTATTGTATTACATACATCTTTAAAGAGAAGCCAACTCTTTATGACTTTACCCAATTGCT
GAGATGGTCTTGTACCATTCTCTGTGACCTTTTCTCTTATCTTAAAGTTAGTAAATAGATATCCATATTGAGGAG
Protein sequenceShow/hide protein sequence
MPKKGELVFKEDGQEYAQVLRRLGNGHCVAMCIDGTKRLCHIGEKMHNKVWIAAGDIILVGLRDNQDDKADVILKYMSDEVRLLKGYSELPENTRLKEGIVGGMDEDKDF
DIEFMDEDFD