| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 1.3e-41 | 46.95 | Show/hide |
Query: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
+ +K IVERK+R+I+ LTLLS +++ L WD+ FSTSV+LINRLPTP+L+ I PL+K F + ++ ++VFGC +PYLRPY SHKL RS+PCTF
Subjt: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
Query: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
LGYST HKGYKCLA+DGRLF+SRHVLF+E SF + + + SS P +S +L S P HS I S + + R +++ S T+H N +
Subjt: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
Query: IVNDQASTEQNSQ
+ + T+++S+
Subjt: IVNDQASTEQNSQ
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| KAA0067212.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 6.9e-40 | 45.54 | Show/hide |
Query: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
+ +K IVERK+RHI+ LTLLS +++ L WD+ F TSV+LIN LPTP+L+ I PL+K F + ++ ++VFGC +PY RPY SHKL RS+PCTF
Subjt: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
Query: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
LGYST HKGYKCLA+DGRLF+SRHVLF+E SF + + + SS+P +S +L S P HS I S + + R +++ S T++ N +
Subjt: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
Query: IVNDQASTEQNSQ
+ + T+++S+
Subjt: IVNDQASTEQNSQ
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| RVW44519.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 8.4e-38 | 44.81 | Show/hide |
Query: IIELLAHIHLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLD
II L+ H +K I+ERK+RHIV LTLL+ +S+ L W D FST+VFLINRLPT +L P + F +YSQ+KVFGC FP+LRPY+ HKLD
Subjt: IIELLAHIHLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLD
Query: FRSSPCTFLGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFN----PSQMSS-----------VPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRI-
FRSSPCTFLGYS+ HKGYKCL GR+F+SR V+F+E F F + P Q+ S V + +VS SL + +S + S L +G I
Subjt: FRSSPCTFLGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFN----PSQMSS-----------VPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRI-
Query: SPNMSLVRDSESSSLPTEHDNGLLIVNDQASTEQNSQLSLL
S L SS++P I+N+ AS +S L L
Subjt: SPNMSLVRDSESSSLPTEHDNGLLIVNDQASTEQNSQLSLL
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| RVW60229.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 8.4e-38 | 44.81 | Show/hide |
Query: IIELLAHIHLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLD
II L+ H +K I+ERK+RHIV LTLL+ +S+ L W D FST+VFLINRLPT +L P + F +YSQ+KVFGC FP+LRPY+ HKLD
Subjt: IIELLAHIHLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLD
Query: FRSSPCTFLGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFN----PSQMSS-----------VPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRI-
FRSSPCTFLGYS+ HKGYKCL GR+F+SR V+F+E F F + P Q+ S V + +VS SL + +S + S L +G I
Subjt: FRSSPCTFLGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFN----PSQMSS-----------VPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRI-
Query: SPNMSLVRDSESSSLPTEHDNGLLIVNDQASTEQNSQLSLL
S L SS++P I+N+ AS +S L L
Subjt: SPNMSLVRDSESSSLPTEHDNGLLIVNDQASTEQNSQLSLL
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| TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 5.6e-42 | 46.95 | Show/hide |
Query: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
+ +K IVERK+R+I+ LTLLS +++ L WD+ FSTSV+LINRLPTP+L+ I PL+K F + ++ ++VFGC +PYLRPY SHKL RS+PCTF
Subjt: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
Query: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
LGYST HKGYKCLA+DGRLF+SRHVLF+E SF + + + SS+P +S +L S P HS I S + + R +++ S T+H N +
Subjt: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
Query: IVNDQASTEQNSQ
+ + T+++S+
Subjt: IVNDQASTEQNSQ
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438FJP6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.1e-38 | 44.81 | Show/hide |
Query: IIELLAHIHLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLD
II L+ H +K I+ERK+RHIV LTLL+ +S+ L W D FST+VFLINRLPT +L P + F +YSQ+KVFGC FP+LRPY+ HKLD
Subjt: IIELLAHIHLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLD
Query: FRSSPCTFLGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFN----PSQMSS-----------VPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRI-
FRSSPCTFLGYS+ HKGYKCL GR+F+SR V+F+E F F + P Q+ S V + +VS SL + +S + S L +G I
Subjt: FRSSPCTFLGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFN----PSQMSS-----------VPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRI-
Query: SPNMSLVRDSESSSLPTEHDNGLLIVNDQASTEQNSQLSLL
S L SS++P I+N+ AS +S L L
Subjt: SPNMSLVRDSESSSLPTEHDNGLLIVNDQASTEQNSQLSLL
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| A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.1e-42 | 46.95 | Show/hide |
Query: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
+ +K IVERK+R+I+ LTLLS +++ L WD+ FSTSV+LINRLPTP+L+ I PL+K F + ++ ++VFGC +PYLRPY SHKL RS+PCTF
Subjt: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
Query: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
LGYST HKGYKCLA+DGRLF+SRHVLF+E SF + + + SS P +S +L S P HS I S + + R +++ S T+H N +
Subjt: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
Query: IVNDQASTEQNSQ
+ + T+++S+
Subjt: IVNDQASTEQNSQ
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| A0A5A7VFQ6 Retrotransposon protein, putative, Ty1-copia subclass | 3.3e-40 | 45.54 | Show/hide |
Query: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
+ +K IVERK+RHI+ LTLLS +++ L WD+ F TSV+LIN LPTP+L+ I PL+K F + ++ ++VFGC +PY RPY SHKL RS+PCTF
Subjt: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
Query: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
LGYST HKGYKCLA+DGRLF+SRHVLF+E SF + + + SS+P +S +L S P HS I S + + R +++ S T++ N +
Subjt: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
Query: IVNDQASTEQNSQ
+ + T+++S+
Subjt: IVNDQASTEQNSQ
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| A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.7e-42 | 46.95 | Show/hide |
Query: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
+ +K IVERK+R+I+ LTLLS +++ L WD+ FSTSV+LINRLPTP+L+ I PL+K F + ++ ++VFGC +PYLRPY SHKL RS+PCTF
Subjt: HLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTF
Query: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
LGYST HKGYKCLA+DGRLF+SRHVLF+E SF + + + SS+P +S +L S P HS I S + + R +++ S T+H N +
Subjt: LGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLPTEHDNGLL
Query: IVNDQASTEQNSQ
+ + T+++S+
Subjt: IVNDQASTEQNSQ
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| A5BMC8 Integrase catalytic domain-containing protein | 4.1e-38 | 44.3 | Show/hide |
Query: IIELLAHIHLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLD
II L+ H +K I+ERK+RHIV LTLL+ +S+ L W D FST+VFLINRLPT +L P + F +YSQ+KVFGC FP+LRPY+ HKLD
Subjt: IIELLAHIHLNKMAYIVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLD
Query: FRSSPCTFLGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLP
FRSSPCTFLGYS+ HKGYKCL GR+F+SR V+F+E F F + Q P + S+ + L + P++ + +SP++SL S SS
Subjt: FRSSPCTFLGYSTIHKGYKCLANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHPIGPRISPNMSLVRDSESSSLP
Query: TEHDNG---LLIVNDQASTEQNSQLSLL
+ + G I D ++T+ +S + +L
Subjt: TEHDNG---LLIVNDQASTEQNSQLSLL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.9e-09 | 32.52 | Show/hide |
Query: IVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTFLGYSTIH
+ ER R IV ++L + + W + T+ +LINR P+ L IP + + + YS +KVFGC F ++ KLD +S PC F+GY
Subjt: IVERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTFLGYSTIH
Query: KGYKCL-ANDGRLFVSRHVLFNE
GY+ ++ SR V+F E
Subjt: KGYKCL-ANDGRLFVSRHVLFNE
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.3e-30 | 44.17 | Show/hide |
Query: ERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTFLGYSTIHKG
ERK+RHIV T LTLLSH+S+ W F+ +V+LINRLPTP+L P K FG +Y +++VFGC +P+LRPY+ HKLD +S C FLGYS
Subjt: ERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTFLGYSTIHKG
Query: YKCL-ANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHP
Y CL RL++SRHV F+E F F N S + + S ++ P +P+L P
Subjt: YKCL-ANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHP
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 3.0e-30 | 40.51 | Show/hide |
Query: ERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTFLGYSTIHKG
ERK+RHIV LTLLSH+S+ W FS +V+LINRLPTP+L P K FGQ +Y ++KVFGC +P+LRPY+ HKL+ +S C F+GYS
Subjt: ERKYRHIVHTSLTLLSHSSMSLIIWDDIFSTSVFLINRLPTPILNGIIPLDKFFGQILDYSQVKVFGCNYFPYLRPYHSHKLDFRSSPCTFLGYSTIHKG
Query: YKCL-ANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHP--IGPRI--------SPNMSLVRDSESSSLPT
Y CL GRL+ SRHV F+E+ F F + S + +S+ + + ++ P +L P +GP + SP+ SS+LP+
Subjt: YKCL-ANDGRLFVSRHVLFNEQSFLFFNPSQMSSVPSKFKSNVSRSLQILSSQPKHSPILSHP--IGPRI--------SPNMSLVRDSESSSLPT
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