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Tan0012371 (gene) of Snake gourd v1 genome

Gene IDTan0012371
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionZinc knuckle CX2CX4HX4C
Genome locationLG01:13576063..13576728
RNA-Seq ExpressionTan0012371
SyntenyTan0012371
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS74010.1 Os01g0714300 [Oryza sativa Japonica Group]5.8e-0545.28Show/hide
Query:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG
        ++R   KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G
Subjt:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG

KAE8767168.1 putative reverse transcriptase [Hordeum vulgare]1.7e-0450.94Show/hide
Query:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG
        + R   + IG  +G F+DVE   +G   G SLRIKVK DI KPL RGT I++G
Subjt:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG

KAE8782072.1 hypothetical protein D1007_44590 [Hordeum vulgare]1.5e-0554.72Show/hide
Query:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG
        + R   + IG  +G F+DVE  E+G  EG SLRIKVK DI KPL RGT I  G
Subjt:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG

PON92154.1 Zinc knuckle CX2CX4HX4C [Trema orientale]2.0e-0541.94Show/hide
Query:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE
        +S+  AK +GN  G F++VE D+NG C G  L ++V  DI KPL RG  +++GS    + V+
Subjt:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.2e-0549.09Show/hide
Query:  MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKV
        M+W+++T A  +GN+IG F+DV+ +E G   G SLRI+V  DI KPL RG  I +
Subjt:  MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKV

TrEMBL top hitse value%identityAlignment
A0A0P0V7D8 Os01g0714300 protein2.8e-0545.28Show/hide
Query:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG
        ++R   KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G
Subjt:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVG

A0A2P5C5M3 Zinc knuckle CX2CX4HX4C1.1e-0448.15Show/hide
Query:  IGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE
        IG+ IG   +VETDENG+C G  +RI+V+ DI  PL RG+ + +G+  E V V+
Subjt:  IGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE

A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C9.6e-0641.94Show/hide
Query:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE
        +S+  AK +GN  G F++VE D+NG C G  L ++V  DI KPL RG  +++GS    + V+
Subjt:  ISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE

A0A6J1DU55 uncharacterized protein LOC1110231355.6e-0649.09Show/hide
Query:  MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKV
        M+W+++T A  +GN+IG F+DV+ +E G   G SLRI+V  DI KPL RG  I +
Subjt:  MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKV

A0A803Q6Y1 Uncharacterized protein2.8e-0549.18Show/hide
Query:  SRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE
        SR  AKA+GN IG FM+V TD   E  G  LRI+VK D+ KPL RG NI++  + ++  V+
Subjt:  SRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTGGATATCACGGACATGGGCTAAGGCGATTGGGAACTCCATAGGGACTTTTATGGATGTTGAAACGGATGAAAATGGTGAATGTGAGGGAGTTTCTCTGAGGAT
AAAAGTCAAGTTTGATATACAAAAACCCTTATGCAGGGGAACCAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGTGTTGAGGAGGCCATGTTTGTTACCGTTGGAA
GGAAAACAGAGGCTACGAAGGATAAAAAATGGGAAAAGGAACTAAAGTGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTGGATATCACGGACATGGGCTAAGGCGATTGGGAACTCCATAGGGACTTTTATGGATGTTGAAACGGATGAAAATGGTGAATGTGAGGGAGTTTCTCTGAGGAT
AAAAGTCAAGTTTGATATACAAAAACCCTTATGCAGGGGAACCAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGTGTTGAGGAGGCCATGTTTGTTACCGTTGGAA
GGAAAACAGAGGCTACGAAGGATAAAAAATGGGAAAAGGAACTAAAGTGGGAATGA
Protein sequenceShow/hide protein sequence
MNWISRTWAKAIGNSIGTFMDVETDENGECEGVSLRIKVKFDIQKPLCRGTNIKVGSMAEEVCVEEAMFVTVGRKTEATKDKKWEKELKWE