CuGenDBv2

Gene ID	Tan0012376
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Tubulin alpha chain
Genome location	LG01:5529298..5535135
RNA-Seq Expression	Tan0012376
Synteny	Tan0012376
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

6.8e-100

87.84

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQILKST SPPSISQP FG QSSR  SELDS+RRF   HGRRRSLRYGCV RRLSFRCAA D+DKE NGEEPPESLFMKELKKRGITPTSL+EDT++
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP
        T+FGLGGEM GENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHDG K PISPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISEIAPRVN
        PYVDPYALLEDERIS++APRVN
Subjt:  PYVDPYALLEDERISEIAPRVN

XP_022149320.1 uncharacterized protein LOC111017763 [Momordica charantia]

1.9e-102

88.24

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQ+LKS  SP SISQP FG +SSR +S+ DS+RRFVRFHGRRRSLRYGCVCRRLSFRCAA DADKE NGEEPPESLFMKELKKRG+TPTSL+ED+NS
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDGKAPISPPP
         +FGLGGEMTGE RDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVH+G+ PISPPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDGKAPISPPP

Query:  YVDPYALLEDERISEIAPRVN
        YVDPYALLEDERIS+ APRVN
Subjt:  YVDPYALLEDERISEIAPRVN

XP_022922737.1 uncharacterized protein LOC111430640 [Cucurbita moschata]

1.5e-99

87.39

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQILKST SPPSISQP FG QSSR  SELDS+RRF   HGRRRSLRYGCV RRLSFRCAA D+DKE NGEEPPESLFMKELKKRGITPTSL+EDT++
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP
        T+FGLGGEM GENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHDG K PISPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISEIAPRVN
        PYVDPYALLEDER+S++APRVN
Subjt:  PYVDPYALLEDERISEIAPRVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

2.3e-100

88.29

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQILKST SPPSISQP FG QSSR  SELDS+RRFV  HGRRRSLRYGCV RRLSFRCAA D+DKE NGEEPPESLFMKELKKRGITPTSL+EDT++
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP
        T+FGLGGEM GENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHDG K PISPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISEIAPRVN
        PYVDPYALLEDERIS++APRVN
Subjt:  PYVDPYALLEDERISEIAPRVN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

1.2e-99

87.84

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQILKST SPPSISQP FG QSSR   ELDS+RRFV  HGRRRSLRYGCV RRLSFRCAA D+DKE NGEEPPESLFMKELKKRGITPTSL+EDT++
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP
        T+FGLGGEM GENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHDG K PISPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISEIAPRVN
        PYVDPYALLEDERIS++APRVN
Subjt:  PYVDPYALLEDERISEIAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BY38 uncharacterized protein LOC103494832

5.4e-95

84.16

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQILKST S PSIS P FG QS+R  S+ DS    +  HGRRRSLR  CVCRR SFRCAA DADKE NGEEPPESLFMKELKKRGITPTSL+EDTN+
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDGKAPISPPP
        ++FGLGGEMTGENRDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF LYFFFG SF+HDGK PISPPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDGKAPISPPP

Query:  YVDPYALLEDERISEIAPRVN
        YVDPYALLEDERIS+IAP VN
Subjt:  YVDPYALLEDERISEIAPRVN

A0A6J1D5D9 uncharacterized protein LOC111017763

9.2e-103

88.24

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQ+LKS  SP SISQP FG +SSR +S+ DS+RRFVRFHGRRRSLRYGCVCRRLSFRCAA DADKE NGEEPPESLFMKELKKRG+TPTSL+ED+NS
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDGKAPISPPP
         +FGLGGEMTGE RDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVH+G+ PISPPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDGKAPISPPP

Query:  YVDPYALLEDERISEIAPRVN
        YVDPYALLEDERIS+ APRVN
Subjt:  YVDPYALLEDERISEIAPRVN

A0A6J1E457 uncharacterized protein LOC111430640

7.3e-100

87.39

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQILKST SPPSISQP FG QSSR  SELDS+RRF   HGRRRSLRYGCV RRLSFRCAA D+DKE NGEEPPESLFMKELKKRGITPTSL+EDT++
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP
        T+FGLGGEM GENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHDG K PISPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISEIAPRVN
        PYVDPYALLEDER+S++APRVN
Subjt:  PYVDPYALLEDERISEIAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

1.1e-100

88.29

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQILKST SPPSISQP FG QSSR  SELDS+RRFV  HGRRRSLRYGCV RRLSFRCAA D+DKE NGEEPPESLFMKELKKRGITPTSL+EDT++
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP
        T+FGLGGEM GENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFF GPSFVHDG K PISPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISEIAPRVN
        PYVDPYALLEDERIS++APRVN
Subjt:  PYVDPYALLEDERISEIAPRVN

A0A6J1JUF8 uncharacterized protein LOC111488465 isoform X1

2.3e-93

84.68

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Query:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS
        MA LQILKST S  S SQ  FGVQSSR  +ELDSSRR VRFHGRRRSLRYGCVCRRLSFRCAA D+ KE NGEEPPESLFMKELKKRGITPTSL+EDT S
Subjt:  MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNS

Query:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP
        TEF LGGE TGEN DFS  SAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVITV+FFFA YFFFG SFVHDG + P SPP
Subjt:  TEFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISEIAPRVN
        PYV PYA LEDERIS+IAPRVN
Subjt:  PYVDPYALLEDERISEIAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

3.2e-47

52.49

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Query:  LQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIED--TNST
        L+I+K   SP S  +        +S  +L+  +R  R    R   R      R+S   A +  D +  GEEPPESLFMKELK+RG+TPTSL++D   +  
Subjt:  LQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIED--TNST

Query:  EFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPPP
        E   G E TG +   S  +A +   +KSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLIV+T+  F ALY +FG  F+HDG + P+SPPP
Subjt:  EFGLGGEMTGENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDG-KAPISPPP

Query:  YVDPYALLEDERISEIAPRVN
        Y+DPYALLEDERIS + PR+N
Subjt:  YVDPYALLEDERISEIAPRVN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTCCTCTGCAAATTCTCAAATCAACCGCCTCTCCTCCTTCGATCTCTCAGCCTTATTTTGGCGTCCAATCGAGCCGGTCCATCTCGGAGTTGGATTCCTCGCGGAG
GTTTGTACGGTTCCATGGCCGTCGGAGGAGTTTGAGATATGGCTGCGTTTGTCGGAGGTTGAGTTTCCGTTGTGCTGCTCATGATGCTGATAAGGAAAGAAATGGAGAAG
AACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGCGAGGTATAACTCCCACTTCCTTGATTGAGGATACTAACAGCACTGAATTTGGACTTGGGGGTGAGATGACG
GGAGAAAACAGAGATTTCTCAAGTAGAAGTGCTGTTTCAACTGAAGTTAACAAGAGCTTATCCAATCAAAGGGAGCGCTCCATGCAATTGAACAGCGAAGGCCTTGAGGG
GTTGATTCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCATCACCGTTTCATTCTTTTTCGCTCTATACTTTTTTT
TTGGACCATCTTTTGTTCACGATGGCAAAGCGCCAATATCTCCTCCACCGTATGTTGATCCATACGCTCTTTTAGAAGACGAGAGAATTTCAGAAATAGCTCCTCGTGTA
AATTGA

mRNA sequence

Show/hide mRNA sequence

AAAAATAAAAATAAAAATAAAAATGAACAAACTATTTCTTCTGCTCCCATTGAATTCCCTGGGAGGAAGAAAGCTCTAGCTCTAGTTATGGCTCCTCTGCAAATTCTCAA
ATCAACCGCCTCTCCTCCTTCGATCTCTCAGCCTTATTTTGGCGTCCAATCGAGCCGGTCCATCTCGGAGTTGGATTCCTCGCGGAGGTTTGTACGGTTCCATGGCCGTC
GGAGGAGTTTGAGATATGGCTGCGTTTGTCGGAGGTTGAGTTTCCGTTGTGCTGCTCATGATGCTGATAAGGAAAGAAATGGAGAAGAACCTCCAGAATCATTATTCATG
AAGGAACTGAAGAAGCGAGGTATAACTCCCACTTCCTTGATTGAGGATACTAACAGCACTGAATTTGGACTTGGGGGTGAGATGACGGGAGAAAACAGAGATTTCTCAAG
TAGAAGTGCTGTTTCAACTGAAGTTAACAAGAGCTTATCCAATCAAAGGGAGCGCTCCATGCAATTGAACAGCGAAGGCCTTGAGGGGTTGATTCCTCGTGCTAAACTTT
TGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCATCACCGTTTCATTCTTTTTCGCTCTATACTTTTTTTTTGGACCATCTTTTGTTCACGAT
GGCAAAGCGCCAATATCTCCTCCACCGTATGTTGATCCATACGCTCTTTTAGAAGACGAGAGAATTTCAGAAATAGCTCCTCGTGTAAATTGACTGCTAGCCATATAATC
CTCTAATGGTTGGTTTTCTGCTACTTTGTTTTCCCTTTCGCAATATTGATTCCTGTCCTTGCAATATTAAATATATATGTAAATGATTATTAGCTAGAATTTTCTGGTTT
AATTTTCGTTTTTAAGACTCATGGTCCTGCGACTCTTGCCA

Protein sequence

Show/hide protein sequence

MAPLQILKSTASPPSISQPYFGVQSSRSISELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAHDADKERNGEEPPESLFMKELKKRGITPTSLIEDTNSTEFGLGGEMT
GENRDFSSRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHDGKAPISPPPYVDPYALLEDERISEIAPRV
N

Tan0012376 (gene) of Snake gourd v1 genome